Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq18 167 3e-36
seq63 98.7 1e-15
>seq18
Length=263653
Score = 167 bits (184), Expect = 3e-36
Identities = 243/342 (71%), Gaps = 5/342 (1%)
Strand=Plus/Minus
Query 36200 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 36259
|| ||| ||| ||||| || ||||| || ||||| || || ||||| || || || |||
Sbjct 150318 TCATTGCTAAAAGTGAGCCCTGGCATGAGACCACGTTTCTTTAGCCAGAAAATCGAAGCA 150259
Query 36260 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA 36319
|| |||||||||||| || || || || || ||||| || | ||||| |||| ||
Sbjct 150258 AAGCTTCCAGAAAAGAATATACCCTCGACGGCGGCAAATGCTACAAGTCGATCTCTG-AA 150200
Query 36320 CCGGCACT----GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 36375
| ||| ||| |||||| | ||||||||||||||||||| || || || ||
Sbjct 150199 TGGTGACTTTTTGTCCGCTATCCATCGTAGAGCCCAATCGGCCTTCTTCTTAACGCATGG 150140
Query 36376 CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 36435
|| ||||| || || || || || | || ||| ||||| || ||| || ||
Sbjct 150139 AATGGTCTCAATGGCGTTGAACAGGTGGTGGCGTTCCGCTTCATCTTGAATATACGTGTC 150080
Query 36436 AATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 36495
||||| ||||||||||| ||||| ||||| || || || || ||||| || ||||| ||
Sbjct 150079 AATCAGCAGACTATACATCTCCGAGTGAATATTCTCTATAGCAATTTGGAAGCCGTAAAA 150020
Query 36496 ACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537
|| | |||||| || | ||| | ||| | |||| |||||
Sbjct 150019 GCAGCGAGCCTCTGTCACCTGAATTTCCCGAGAAAAGCGTTC 149978
Score = 125 bits (138), Expect = 9e-24
Identities = 171/239 (72%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926
||||||||||| ||||| | |||| || ||||| || |||||||| | ||||| ||
Sbjct 150701 TTTTGGTATTCGCCCACCTTTCTTTCAAAGAAATTGGTCTTACCTTCAAGCGATATCATT 150642
Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986
||||| || ||||| ||||| | |||| || || || | | |||| ||| | |
Sbjct 150641 TCCATAAAGTCGAACGGATTCTCAGCATTGTATATCTTGTCGCAGTCCAACTCAACCAAC 150582
Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046
|| | ||| || || ||||||| ||| ||||| | | |||||||| || || ||
Sbjct 150581 AAACGATCGGCCACGTATTCTATGTATTGGCACATCAGTACGCAATTCATGCCGATCAGG 150522
Query 36047 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 36105
|| || ||||| ||| | ||||| || ||||| ||||| | |||||| ||| ||| ||
Sbjct 150521 TTGACAGGAAGTGCCTCGGTAAGGAACTCTTGCTCAATGGCGACCGCCTCTCGTATGAT 150463
>seq63
Length=178715
Score = 98.7 bits (108), Expect = 1e-15
Identities = 134/187 (72%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395
|| || ||||| || || |||| || || | |||||| ||| | |||||| |||||
Sbjct 170905 AGCCCAATTCCTCCGGCATTTTTTGAAATAATCGCGCATTCTTTGAGCGTATCGTAGATT 170846
Query 66396 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 66455
||||| || || || || |||| | || ||||| || ||| || || | | |
Sbjct 170845 CCCTCAATGCTGTCCGCCTTCATTGTGAGCAGAAAGCAACTACTCAACTGTGGCTTGCAA 170786
Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515
||||| | ||||| | |||||| |||||||| |||||||||||||| || | ||| ||
Sbjct 170785 GTTCCAGAGTTAAAAAGGGTAGGCGAAGCGTGGGTAAACCATTTTTCTGACATTAGGTTA 170726
Query 66516 TACGTCT 66522
|| ||||
Sbjct 170725 TATGTCT 170719
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658138607923040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |