Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq18 167 3e-36 seq63 98.7 1e-15 >seq18 Length=263653 Score = 167 bits (184), Expect = 3e-36 Identities = 243/342 (71%), Gaps = 5/342 (1%) Strand=Plus/Minus Query 36200 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 36259 || ||| ||| ||||| || ||||| || ||||| || || ||||| || || || ||| Sbjct 150318 TCATTGCTAAAAGTGAGCCCTGGCATGAGACCACGTTTCTTTAGCCAGAAAATCGAAGCA 150259 Query 36260 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA 36319 || |||||||||||| || || || || || ||||| || | ||||| |||| || Sbjct 150258 AAGCTTCCAGAAAAGAATATACCCTCGACGGCGGCAAATGCTACAAGTCGATCTCTG-AA 150200 Query 36320 CCGGCACT----GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 36375 | ||| ||| |||||| | ||||||||||||||||||| || || || || Sbjct 150199 TGGTGACTTTTTGTCCGCTATCCATCGTAGAGCCCAATCGGCCTTCTTCTTAACGCATGG 150140 Query 36376 CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 36435 || ||||| || || || || || | || ||| ||||| || ||| || || Sbjct 150139 AATGGTCTCAATGGCGTTGAACAGGTGGTGGCGTTCCGCTTCATCTTGAATATACGTGTC 150080 Query 36436 AATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 36495 ||||| ||||||||||| ||||| ||||| || || || || ||||| || ||||| || Sbjct 150079 AATCAGCAGACTATACATCTCCGAGTGAATATTCTCTATAGCAATTTGGAAGCCGTAAAA 150020 Query 36496 ACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 || | |||||| || | ||| | ||| | |||| ||||| Sbjct 150019 GCAGCGAGCCTCTGTCACCTGAATTTCCCGAGAAAAGCGTTC 149978 Score = 125 bits (138), Expect = 9e-24 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 ||||||||||| ||||| | |||| || ||||| || |||||||| | ||||| || Sbjct 150701 TTTTGGTATTCGCCCACCTTTCTTTCAAAGAAATTGGTCTTACCTTCAAGCGATATCATT 150642 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986 ||||| || ||||| ||||| | |||| || || || | | |||| ||| | | Sbjct 150641 TCCATAAAGTCGAACGGATTCTCAGCATTGTATATCTTGTCGCAGTCCAACTCAACCAAC 150582 Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046 || | ||| || || ||||||| ||| ||||| | | |||||||| || || || Sbjct 150581 AAACGATCGGCCACGTATTCTATGTATTGGCACATCAGTACGCAATTCATGCCGATCAGG 150522 Query 36047 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 36105 || || ||||| ||| | ||||| || ||||| ||||| | |||||| ||| ||| || Sbjct 150521 TTGACAGGAAGTGCCTCGGTAAGGAACTCTTGCTCAATGGCGACCGCCTCTCGTATGAT 150463 >seq63 Length=178715 Score = 98.7 bits (108), Expect = 1e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 || || ||||| || || |||| || || | |||||| ||| | |||||| ||||| Sbjct 170905 AGCCCAATTCCTCCGGCATTTTTTGAAATAATCGCGCATTCTTTGAGCGTATCGTAGATT 170846 Query 66396 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 66455 ||||| || || || || |||| | || ||||| || ||| || || | | | Sbjct 170845 CCCTCAATGCTGTCCGCCTTCATTGTGAGCAGAAAGCAACTACTCAACTGTGGCTTGCAA 170786 Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||| | ||||| | |||||| |||||||| |||||||||||||| || | ||| || Sbjct 170785 GTTCCAGAGTTAAAAAGGGTAGGCGAAGCGTGGGTAAACCATTTTTCTGACATTAGGTTA 170726 Query 66516 TACGTCT 66522 || |||| Sbjct 170725 TATGTCT 170719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658138607923040