Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_003444.1 Length=37074 Score E Sequences producing significant alignments: (Bits) Value seq1066 1458 0.0 seq1689 98.7 2e-16 seq132 89.7 1e-13 >seq1066 Length=13853 Score = 1458 bits (1616), Expect = 0.0 Identities = 1249/1526 (82%), Gaps = 29/1526 (2%) Strand=Plus/Minus Query 33675 AACCCGCCGCTGAGCGGGtttttttGTGCCT-TGATGTTGG--CAGTACGGTAAACACGC 33731 |||||||| ||||||||||||||| || ||| | | ||| |||||| |||||||||| Sbjct 1858 AACCCGCCACTGAGCGGGTTTTTT-GTACCTGTAAACCTGGTGCAGTACAGTAAACACGC 1800 Query 33732 TGGTGGTCGTGAATACTGACTTTTTATCTTGCTGGCTTTTTAGACAAGAGTTATTGGTAT 33791 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1799 TGGTGGTCGTGAATACTGACTTTTTATCTTGCTGGCTTTTTAGACAAGAGTTATTGGTAT 1740 Query 33792 GTCATGTTAACCAGAAGG-AAAAAGGCATGCTAAAACAGCAAGATATGACAGAAACGGCG 33850 |||||||||||||||||| |||||| |||||||||||||||||||||||||||||| || Sbjct 1739 GTCATGTTAACCAGAAGGGAAAAAGACATGCTAAAACAGCAAGATATGACAGAAACCGCC 1680 Query 33851 AAAGTTGTTTTTAATGAATTAA--GCATCGAACCGGCAACAGTCGGGGAGATTGCACAAA 33908 | || || || ||| || || || | | | | | || | | Sbjct 1679 GCCGCAGTCCTTCATTTCTTACCTGCTGACAAGTGGGTAACGCCACGCATGATGACGAGA 1620 Query 33909 ACACATATCTTTC-ACGCGAA---CGCTGTCAGTTAATACTGACCCAGTTGGTTATGGCG 33964 || || | | ||||| || || |||||||||||||| ||||| ||| ||||| Sbjct 1619 AC---TACCGGAGTAAGCGAAGCCCGGTGCCAGTTAATACTGACTCAGTTAGTTCTGGCG 1563 Query 33965 GGGCTGGCA---GATTACCA---GTTCGGCTGTTA---CAGACGCCTTCAGCAATGAAGG 34015 || ||||| ||| || || ||| | | ||||||| ||| |||| || Sbjct 1562 GGTCTGGCGAAGGATAACGGCGGGTACGGGAATAAATTCAGACGCTGCCAGTAATGGCGG 1503 Query 34016 ACTTTTAATTTGTGAAAATGGGCGGCTGGTGGGTGTTGGTAGCACCTGCCAGCCATTCGC 34075 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1502 --TTTCCTGCTGTGAAAATGGGCGGCTGGTGGGTGTTGGTAGCACCTGCCAGCCATTCGC 1445 Query 34076 TCATGCTTACTGGTCACAAGCGAACCACGGCCCACTGCTTTAGCGCAAAAGCAGAGTGAG 34135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1444 TCATGCTTACTGGTCACAAGCGAACCACGGCCCACTGCTTTAGCGCAAAAGCAGAGTGAG 1385 Query 34136 CCTACCAGAGTTACGCTTACTGATCCATGAAAAATACTGTAAAAATAAACAGTGTTGATT 34195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1384 CCTACCAGAGTTACGCTTACTGATCCATGAAAAATACTGTAAAAATAAACAGTGTTGATT 1325 Query 34196 TAATCAACGCTGATTGCCTGCATTTTATTCAGTCCCTGCCTGATGATTCCATTGACCTGA 34255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1324 TAATCAACGCTGATTGCCTGCATTTTATTCAGTCCCTGCCTGATGATTCCATTGACCTGA 1265 Query 34256 TTGTTACCGATCCGCCGTACTTCAAGGTGAAACCCAACGGTTGGGACAATCAGTGGAAAG 34315 ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1264 TTGTTACAGATCCGCCGTACTTCAAGGTGAAACCCAACGACTGGGACAATCAGTGGAAAG 1205 Query 34316 GGGACGAAGATTACCTTAAGTGGCTGGATCACTGTCTGGCCCAGTTCTGGCGGGTGTTGA 34375 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1204 AGGACGAAGATTACCTTAAGTGGCTGGACCACTGTCTGGCCCAGTTCTGGCGGGTGTTGA 1145 Query 34376 AACCTGCCGGAAGCCTTTACCTGTTCTGTGGACATCGCCTGGCATCTGATATTGAGATCA 34435 ||||| ||||||| ||||||||||||||||| |||||||||||||||||||| || |||| Sbjct 1144 AACCTTCCGGAAGTCTTTACCTGTTCTGTGGTCATCGCCTGGCATCTGATATCGAAATCA 1085 Query 34436 TGATGCGTGAACGTTTCAACGTGCTTAACCATATCATCTGGGCGAAGCCGTCCGGACGTT 34495 ||||||||||||| || || ||||| ||||| || |||||||||||||||||||| || | Sbjct 1084 TGATGCGTGAACGCTTTAATGTGCTGAACCACATTATCTGGGCGAAGCCGTCCGGGCGCT 1025 Query 34496 GGAATGGGTGTAATAAAGAAAGTCTGCGTGCATATTTTCCTGCCACAGAGCGCGTTCTGT 34555 |||| ||||| || || ||||| ||||| || ||||| || |||||||||||| |||||| Sbjct 1024 GGAACGGGTGCAACAAGGAAAGCCTGCGGGCGTATTTCCCCGCCACAGAGCGCATTCTGT 965 Query 34556 TTGCTGAACATTACCAGGGGCCATATCGTGGCAAAAG-TGACGGCTATGCGGCAAAAGAA 34614 | || |||||||| |||||||| |||||| |||||| ||| ||||||| ||| || | Sbjct 964 TCGCGGAACATTATCAGGGGCCGTATCGTC-CAAAAGATGATGGCTATGAGGCGAAGGGC 906 Query 34615 AGGGAACTCAAACAGCACATAATGGCACCGCTGATATCGTATTTCAGGAATGCTCGTGCC 34674 |||| ||| |||||||| | ||||| |||||||| || || || | |||| ||||| Sbjct 905 AGGGCACTGAAACAGCATGTGATGGCTCCGCTGATTTCTTACTTTCGTGATGCGCGTGCG 846 Query 34675 GAACTGGGTATAACGGCAAAACAAATTGCCGAAGCCACAGGTAAGAAAAATATGGTTTCC 34734 | ||||| |||||||||||||| ||||| || | | |||| |||||||| ||||| || Sbjct 845 GCTCTGGGGATAACGGCAAAACAGATTGCTGATGTCTCAGGAAAGAAAAACATGGTGTCG 786 Query 34735 CACTGGTTTGGTGCCAGTCAGTGGCAGTTGCCGAATGAGGCTGACTACCGGAAGTTACAG 34794 |||||||| ||||||| ||||||||||| ||||| |||| ||| ||| | || | ||| Sbjct 785 CACTGGTTCAGTGCCAGCCAGTGGCAGTTACCGAACGAGGATGATTACAGAAAACTTCAG 726 Query 34795 GCACTGTTTTCCCGTATAGCGGCAGAGAAGTTTCAGGAACAGCAACTGGAACAACCACAC 34854 | |||||| |||| | || | |||||| |||| |||||||| | ||||| Sbjct 725 GTGCTGTTTGCCCGGGTGGCAGAAGAGAAACATCAGCGGGGTGAACTGGAAAAGCCACAT 666 Query 34855 CACCAGCTGGT-GGCATCTTATGATTCACTGAATCGCAAATATTCTGAATTGCTGGATGA 34913 ||||| ||||| ||| | || | ||||| || | ||| | ||||||| || Sbjct 665 CACCAACTGGTCAGCA-CATACAGTGAGCTGAACCGGCAGTATGCCAGCCTGCTGGAAGA 607 Query 34914 GTTTAAATCACTCCGGCGCTATTTCTCCGTATCAGTCTCCGTGCCTTATACCGATGTCTG 34973 || ||||| || ||||| ||||| |||||||| | |||| |||||||| |||||||| Sbjct 606 GTACAAATCCCTGCGGCGTTATTTTTCCGTATCGGCAGCCGTTCCTTATACGGATGTCTG 547 Query 34974 GACGCATAAGCCCGTTCAGTTCTATCCGGGTAAACATCCGTGCGAGAAACCGGCGGATAT 35033 |||||| ||||| || |||| |||||||| |||||||| || || |||||||| ||||| Sbjct 546 GACGCACAAGCCTGTGCAGTATTATCCGGGCAAACATCCCTGTGAAAAACCGGCAGATAT 487 Query 35034 GCTCCGGCAAATAATCAATGCCAGTAGTCGACCAGGCGATCTGGTTGCTGATTTCTTTAT 35093 | | |||||||| || | |||||| ||||| || || || |||||||| |||||||| || Sbjct 486 GTTGCGGCAAATGATTACTGCCAGCAGTCGTCCGGGTGACCTGGTTGCAGATTTCTTCAT 427 Query 35094 GGGATCCGGTTCCACAATAAAAGCGGCAATGGCGCTGGGGCGTCAGGCGTTAGGTGTTGA 35153 ||| |||||||| ||| | ||||| || |||||||||||||||| || | ||||| || Sbjct 426 GGGGTCCGGTTCGACAGTCAAAGCAGCGATGGCGCTGGGGCGTCGTGCAATTGGTGTCGA 367 Query 35154 ACTTGAGTCAGAGCGGTTTAATCAGA 35179 || ||| | || || ||| | |||| Sbjct 366 GCTGGAGGCTGAACGTTTTGAGCAGA 341 Score = 338 bits (374), Expect = 1e-88 Identities = 252/295 (85%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 27567 ATTGATTCTGCCATTCCGGGACGTTACACTGTTCAGGCACCTTATAAAGCGGGTGCCGGG 27626 ||||||||||| | |||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 8326 ATTGATTCTGCAAGTCCGGGACGTTACACTGTTCCGGCACCTTATAAAACGGGTGCCGGG 8267 Query 27627 ATTGGCGTCCTGGAATTGATCAAGGCGATATATGACGCGCCAGCGTCTTTTTTATCGTCC 27686 ||| || || ||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 8266 ATTTGCACCCCGGAATTGATCAAGGCGATATACGACGCGCCAGCGTCTTTTTTATCGTCC 8207 Query 27687 GCATTTGCTCACATCAAAGTTATGGTGGGCTGGGCGGGGGCATCGAAAGATGCGCCGGTT 27746 | | | ||| || | |||||||||||||||| |||| |||||| |||||||| Sbjct 8206 ACGCTCACGCACGCCAGAATTATGGTGGGCTGGGCAGGGGAGCCGAAAGGCTCGCCGGTT 8147 Query 27747 TCCTTGATCACCGGTTACGCCAACCCCGTTCAGTTCACCACCAGCGAAATTGCCGTTTCC 27806 ||||||||| ||||| || ||||| ||||||| | |||||||||| ||| | ||| Sbjct 8146 TCCTTGATCGCCGGTAGTGCAAACCCTGTTCAGTCCGCCACCAGCGAGATTTGCACCTCC 8087 Query 27807 GGTGGTGGAAGTATTTCACCGATCAAGGAGGCTGCCATCATGGCTACTGTCCCAG 27861 |||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 8086 GGTGGTGGAAGTATTTCACCGATCAAGGAGGCTGCCATTATGGCTACGATCCCAG 8032 Score = 264 bits (292), Expect = 3e-66 Identities = 236/296 (80%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 28729 CTGTTGGTGCATCAGTTGATGAGTCCGTGCGAGTTCGTTCAAACCGACCGGAATACTCTC 28788 || |||| ||||| | ||| | ||| | | || ||||| ||||| |||||| || | Sbjct 5987 CTATTGGCGCATCCGCTGACGCGTCTGCACCAGCGCGTTCTTCCCGACAGGAATATTCAC 5928 Query 28789 CGGAGTTTGAGCAGGCATGGCTGGCATATCCCAAACGTGCTGGTGGCAATTCAAAATCTG 28848 |||| ||||| ||||| |||| || ||||||||||||||||||||||||||| || || | Sbjct 5927 CGGAATTTGAACAGGCCTGGCAGGAATATCCCAAACGTGCTGGTGGCAATTCCAAGTCAG 5868 Query 28849 CAGCCTTCAAAGCCTGGAAAGCCCGTTTGAACGAGGGAGTAAACCCCGAAACCATGCTGG 28908 |||||||||||||||||||||||||| | | |||||| |||| || || |||||||| | Sbjct 5867 CAGCCTTCAAAGCCTGGAAAGCCCGTATCAGGGAGGGAATAAAACCGGAGACCATGCTTG 5808 Query 28909 AAGGTGTGAAACGCTACGCGGGCTGGGTATCTGCGATGGGCAATAGCGGCACACAATTTG 28968 | || ||||| || || || | ||||||| ||| | || |||| ||||||||| || | Sbjct 5807 ATGGCGTGAAGCGGTATGCTGCCTGGGTACGTGCCACAGGAAATACCGGCACACAGTTCG 5748 Query 28969 TGAAACAGGCTGTCACGTTCTTTGGTCCAGATCGTCATTTCGAAGAATCCTGGGAA 29024 |||| ||||||| ||||||||||| || |||||||| |||||||| | |||| || Sbjct 5747 TGAAGCAGGCTGCGACGTTCTTTGGACCCGATCGTCACTTCGAAGACTTCTGGCAA 5692 Score = 136 bits (150), Expect = 9e-28 Identities = 129/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 27390 TTGTGCAGGAACTTAACCGCTGGTTTCGTGACGGAAGAGGACTTTATGTTCATGTTATTC 27449 || |||| | || || |||||||| ||||||||||| || | | |||||| ||||| | Sbjct 9250 TTATGCAAGTCCTCAATCGCTGGTTCCGTGACGGAAGGGGGCGTCGTGTTCACGTTATAC 9191 Query 27450 GTTGGGAGCCAGAAACACAGCGCGTTATCTATCTTCGCAAAGACTACCCGCATGAGTGCT 27509 | |||||||| ||||||||||| ||||| ||||| || | | || || |||| || | Sbjct 9190 GCTGGGAGCCTGAAACACAGCGGGTTATTTATCTGCGTGATGGTTATCCATATGAATGTT 9131 Query 27510 TTAGTCCTTTGTGGAAATTCAGGCGTGATTTTGTTGAGTGTGAAG 27554 | || || |||||| ||||||||||||||||| |||||||||| Sbjct 9130 TCAGCCCGTTGTGGTTGTTCAGGCGTGATTTTGTGGAGTGTGAAG 9086 >seq1689 Length=6107 Score = 98.7 bits (108), Expect = 2e-16 Identities = 131/175 (75%), Gaps = 13/175 (7%) Strand=Plus/Minus Query 27708 ATGGTGGGCT-GGGCGGGGGCATCGAAAGATGCGCCGGTTTCCTTGATCACCGGTTACGC 27766 |||||||| | |||||||||| ||| |||| |||||||| || ||| ||||| | || Sbjct 3112 ATGGTGGGATCGGGCGGGGGCGTCGTAAGACGCGCCGGTGTCAGTGAGG-CCGGTAATGC 3054 Query 27767 CAACCCCGTTCAGTT-CACCACCAGCGAAATTGCCGTTTCCGGTGGTGGAAGTATTTCAC 27825 |||| |||| | ||| ||||||| | ||||||| | ||||||||||||| || ||| Sbjct 3053 CAACTCCGTCCGGTTTCACCACCCGTGAAATTGGCATTTCCGGTGGTGG-AGATCATCAT 2995 Query 27826 CGATCA-AGGAGGCTGCCATCATGGCTACTGTCCCAGCCCTCACTCGTCTGAATG 27879 | ||| |||||||||| ||||| ||| |||||||| |||||||| Sbjct 2994 CACTCACTGGAGGCTGCCCCTATGGCAACT------ACCCTCACT--TCTGAATG 2948 >seq132 Length=122212 Score = 89.7 bits (98), Expect = 1e-13 Identities = 56/59 (95%), Gaps = 1/59 (2%) Strand=Plus/Minus Query 4 GGACTGCCCGCCCCATCGtttttttATACCCGCGAAAAATGAAATTTAA-CCAGGAGTG 61 ||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| Sbjct 119995 GGACTGCCCGCCCCATCGTTTTTTTATACCCGCGAAAAATGAAATTTAATCCGGGCGTG 119937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118509350978592