Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_003444.1
Length=37074
Score E
Sequences producing significant alignments: (Bits) Value
seq1066 1458 0.0
seq1689 98.7 2e-16
seq132 89.7 1e-13
>seq1066
Length=13853
Score = 1458 bits (1616), Expect = 0.0
Identities = 1249/1526 (82%), Gaps = 29/1526 (2%)
Strand=Plus/Minus
Query 33675 AACCCGCCGCTGAGCGGGtttttttGTGCCT-TGATGTTGG--CAGTACGGTAAACACGC 33731
|||||||| ||||||||||||||| || ||| | | ||| |||||| ||||||||||
Sbjct 1858 AACCCGCCACTGAGCGGGTTTTTT-GTACCTGTAAACCTGGTGCAGTACAGTAAACACGC 1800
Query 33732 TGGTGGTCGTGAATACTGACTTTTTATCTTGCTGGCTTTTTAGACAAGAGTTATTGGTAT 33791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 TGGTGGTCGTGAATACTGACTTTTTATCTTGCTGGCTTTTTAGACAAGAGTTATTGGTAT 1740
Query 33792 GTCATGTTAACCAGAAGG-AAAAAGGCATGCTAAAACAGCAAGATATGACAGAAACGGCG 33850
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||
Sbjct 1739 GTCATGTTAACCAGAAGGGAAAAAGACATGCTAAAACAGCAAGATATGACAGAAACCGCC 1680
Query 33851 AAAGTTGTTTTTAATGAATTAA--GCATCGAACCGGCAACAGTCGGGGAGATTGCACAAA 33908
| || || || ||| || || || | | | | | || | |
Sbjct 1679 GCCGCAGTCCTTCATTTCTTACCTGCTGACAAGTGGGTAACGCCACGCATGATGACGAGA 1620
Query 33909 ACACATATCTTTC-ACGCGAA---CGCTGTCAGTTAATACTGACCCAGTTGGTTATGGCG 33964
|| || | | ||||| || || |||||||||||||| ||||| ||| |||||
Sbjct 1619 AC---TACCGGAGTAAGCGAAGCCCGGTGCCAGTTAATACTGACTCAGTTAGTTCTGGCG 1563
Query 33965 GGGCTGGCA---GATTACCA---GTTCGGCTGTTA---CAGACGCCTTCAGCAATGAAGG 34015
|| ||||| ||| || || ||| | | ||||||| ||| |||| ||
Sbjct 1562 GGTCTGGCGAAGGATAACGGCGGGTACGGGAATAAATTCAGACGCTGCCAGTAATGGCGG 1503
Query 34016 ACTTTTAATTTGTGAAAATGGGCGGCTGGTGGGTGTTGGTAGCACCTGCCAGCCATTCGC 34075
||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1502 --TTTCCTGCTGTGAAAATGGGCGGCTGGTGGGTGTTGGTAGCACCTGCCAGCCATTCGC 1445
Query 34076 TCATGCTTACTGGTCACAAGCGAACCACGGCCCACTGCTTTAGCGCAAAAGCAGAGTGAG 34135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 TCATGCTTACTGGTCACAAGCGAACCACGGCCCACTGCTTTAGCGCAAAAGCAGAGTGAG 1385
Query 34136 CCTACCAGAGTTACGCTTACTGATCCATGAAAAATACTGTAAAAATAAACAGTGTTGATT 34195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 CCTACCAGAGTTACGCTTACTGATCCATGAAAAATACTGTAAAAATAAACAGTGTTGATT 1325
Query 34196 TAATCAACGCTGATTGCCTGCATTTTATTCAGTCCCTGCCTGATGATTCCATTGACCTGA 34255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 TAATCAACGCTGATTGCCTGCATTTTATTCAGTCCCTGCCTGATGATTCCATTGACCTGA 1265
Query 34256 TTGTTACCGATCCGCCGTACTTCAAGGTGAAACCCAACGGTTGGGACAATCAGTGGAAAG 34315
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1264 TTGTTACAGATCCGCCGTACTTCAAGGTGAAACCCAACGACTGGGACAATCAGTGGAAAG 1205
Query 34316 GGGACGAAGATTACCTTAAGTGGCTGGATCACTGTCTGGCCCAGTTCTGGCGGGTGTTGA 34375
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1204 AGGACGAAGATTACCTTAAGTGGCTGGACCACTGTCTGGCCCAGTTCTGGCGGGTGTTGA 1145
Query 34376 AACCTGCCGGAAGCCTTTACCTGTTCTGTGGACATCGCCTGGCATCTGATATTGAGATCA 34435
||||| ||||||| ||||||||||||||||| |||||||||||||||||||| || ||||
Sbjct 1144 AACCTTCCGGAAGTCTTTACCTGTTCTGTGGTCATCGCCTGGCATCTGATATCGAAATCA 1085
Query 34436 TGATGCGTGAACGTTTCAACGTGCTTAACCATATCATCTGGGCGAAGCCGTCCGGACGTT 34495
||||||||||||| || || ||||| ||||| || |||||||||||||||||||| || |
Sbjct 1084 TGATGCGTGAACGCTTTAATGTGCTGAACCACATTATCTGGGCGAAGCCGTCCGGGCGCT 1025
Query 34496 GGAATGGGTGTAATAAAGAAAGTCTGCGTGCATATTTTCCTGCCACAGAGCGCGTTCTGT 34555
|||| ||||| || || ||||| ||||| || ||||| || |||||||||||| ||||||
Sbjct 1024 GGAACGGGTGCAACAAGGAAAGCCTGCGGGCGTATTTCCCCGCCACAGAGCGCATTCTGT 965
Query 34556 TTGCTGAACATTACCAGGGGCCATATCGTGGCAAAAG-TGACGGCTATGCGGCAAAAGAA 34614
| || |||||||| |||||||| |||||| |||||| ||| ||||||| ||| || |
Sbjct 964 TCGCGGAACATTATCAGGGGCCGTATCGTC-CAAAAGATGATGGCTATGAGGCGAAGGGC 906
Query 34615 AGGGAACTCAAACAGCACATAATGGCACCGCTGATATCGTATTTCAGGAATGCTCGTGCC 34674
|||| ||| |||||||| | ||||| |||||||| || || || | |||| |||||
Sbjct 905 AGGGCACTGAAACAGCATGTGATGGCTCCGCTGATTTCTTACTTTCGTGATGCGCGTGCG 846
Query 34675 GAACTGGGTATAACGGCAAAACAAATTGCCGAAGCCACAGGTAAGAAAAATATGGTTTCC 34734
| ||||| |||||||||||||| ||||| || | | |||| |||||||| ||||| ||
Sbjct 845 GCTCTGGGGATAACGGCAAAACAGATTGCTGATGTCTCAGGAAAGAAAAACATGGTGTCG 786
Query 34735 CACTGGTTTGGTGCCAGTCAGTGGCAGTTGCCGAATGAGGCTGACTACCGGAAGTTACAG 34794
|||||||| ||||||| ||||||||||| ||||| |||| ||| ||| | || | |||
Sbjct 785 CACTGGTTCAGTGCCAGCCAGTGGCAGTTACCGAACGAGGATGATTACAGAAAACTTCAG 726
Query 34795 GCACTGTTTTCCCGTATAGCGGCAGAGAAGTTTCAGGAACAGCAACTGGAACAACCACAC 34854
| |||||| |||| | || | |||||| |||| |||||||| | |||||
Sbjct 725 GTGCTGTTTGCCCGGGTGGCAGAAGAGAAACATCAGCGGGGTGAACTGGAAAAGCCACAT 666
Query 34855 CACCAGCTGGT-GGCATCTTATGATTCACTGAATCGCAAATATTCTGAATTGCTGGATGA 34913
||||| ||||| ||| | || | ||||| || | ||| | ||||||| ||
Sbjct 665 CACCAACTGGTCAGCA-CATACAGTGAGCTGAACCGGCAGTATGCCAGCCTGCTGGAAGA 607
Query 34914 GTTTAAATCACTCCGGCGCTATTTCTCCGTATCAGTCTCCGTGCCTTATACCGATGTCTG 34973
|| ||||| || ||||| ||||| |||||||| | |||| |||||||| ||||||||
Sbjct 606 GTACAAATCCCTGCGGCGTTATTTTTCCGTATCGGCAGCCGTTCCTTATACGGATGTCTG 547
Query 34974 GACGCATAAGCCCGTTCAGTTCTATCCGGGTAAACATCCGTGCGAGAAACCGGCGGATAT 35033
|||||| ||||| || |||| |||||||| |||||||| || || |||||||| |||||
Sbjct 546 GACGCACAAGCCTGTGCAGTATTATCCGGGCAAACATCCCTGTGAAAAACCGGCAGATAT 487
Query 35034 GCTCCGGCAAATAATCAATGCCAGTAGTCGACCAGGCGATCTGGTTGCTGATTTCTTTAT 35093
| | |||||||| || | |||||| ||||| || || || |||||||| |||||||| ||
Sbjct 486 GTTGCGGCAAATGATTACTGCCAGCAGTCGTCCGGGTGACCTGGTTGCAGATTTCTTCAT 427
Query 35094 GGGATCCGGTTCCACAATAAAAGCGGCAATGGCGCTGGGGCGTCAGGCGTTAGGTGTTGA 35153
||| |||||||| ||| | ||||| || |||||||||||||||| || | ||||| ||
Sbjct 426 GGGGTCCGGTTCGACAGTCAAAGCAGCGATGGCGCTGGGGCGTCGTGCAATTGGTGTCGA 367
Query 35154 ACTTGAGTCAGAGCGGTTTAATCAGA 35179
|| ||| | || || ||| | ||||
Sbjct 366 GCTGGAGGCTGAACGTTTTGAGCAGA 341
Score = 338 bits (374), Expect = 1e-88
Identities = 252/295 (85%), Gaps = 0/295 (0%)
Strand=Plus/Minus
Query 27567 ATTGATTCTGCCATTCCGGGACGTTACACTGTTCAGGCACCTTATAAAGCGGGTGCCGGG 27626
||||||||||| | |||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 8326 ATTGATTCTGCAAGTCCGGGACGTTACACTGTTCCGGCACCTTATAAAACGGGTGCCGGG 8267
Query 27627 ATTGGCGTCCTGGAATTGATCAAGGCGATATATGACGCGCCAGCGTCTTTTTTATCGTCC 27686
||| || || ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 8266 ATTTGCACCCCGGAATTGATCAAGGCGATATACGACGCGCCAGCGTCTTTTTTATCGTCC 8207
Query 27687 GCATTTGCTCACATCAAAGTTATGGTGGGCTGGGCGGGGGCATCGAAAGATGCGCCGGTT 27746
| | | ||| || | |||||||||||||||| |||| |||||| ||||||||
Sbjct 8206 ACGCTCACGCACGCCAGAATTATGGTGGGCTGGGCAGGGGAGCCGAAAGGCTCGCCGGTT 8147
Query 27747 TCCTTGATCACCGGTTACGCCAACCCCGTTCAGTTCACCACCAGCGAAATTGCCGTTTCC 27806
||||||||| ||||| || ||||| ||||||| | |||||||||| ||| | |||
Sbjct 8146 TCCTTGATCGCCGGTAGTGCAAACCCTGTTCAGTCCGCCACCAGCGAGATTTGCACCTCC 8087
Query 27807 GGTGGTGGAAGTATTTCACCGATCAAGGAGGCTGCCATCATGGCTACTGTCCCAG 27861
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 8086 GGTGGTGGAAGTATTTCACCGATCAAGGAGGCTGCCATTATGGCTACGATCCCAG 8032
Score = 264 bits (292), Expect = 3e-66
Identities = 236/296 (80%), Gaps = 0/296 (0%)
Strand=Plus/Minus
Query 28729 CTGTTGGTGCATCAGTTGATGAGTCCGTGCGAGTTCGTTCAAACCGACCGGAATACTCTC 28788
|| |||| ||||| | ||| | ||| | | || ||||| ||||| |||||| || |
Sbjct 5987 CTATTGGCGCATCCGCTGACGCGTCTGCACCAGCGCGTTCTTCCCGACAGGAATATTCAC 5928
Query 28789 CGGAGTTTGAGCAGGCATGGCTGGCATATCCCAAACGTGCTGGTGGCAATTCAAAATCTG 28848
|||| ||||| ||||| |||| || ||||||||||||||||||||||||||| || || |
Sbjct 5927 CGGAATTTGAACAGGCCTGGCAGGAATATCCCAAACGTGCTGGTGGCAATTCCAAGTCAG 5868
Query 28849 CAGCCTTCAAAGCCTGGAAAGCCCGTTTGAACGAGGGAGTAAACCCCGAAACCATGCTGG 28908
|||||||||||||||||||||||||| | | |||||| |||| || || |||||||| |
Sbjct 5867 CAGCCTTCAAAGCCTGGAAAGCCCGTATCAGGGAGGGAATAAAACCGGAGACCATGCTTG 5808
Query 28909 AAGGTGTGAAACGCTACGCGGGCTGGGTATCTGCGATGGGCAATAGCGGCACACAATTTG 28968
| || ||||| || || || | ||||||| ||| | || |||| ||||||||| || |
Sbjct 5807 ATGGCGTGAAGCGGTATGCTGCCTGGGTACGTGCCACAGGAAATACCGGCACACAGTTCG 5748
Query 28969 TGAAACAGGCTGTCACGTTCTTTGGTCCAGATCGTCATTTCGAAGAATCCTGGGAA 29024
|||| ||||||| ||||||||||| || |||||||| |||||||| | |||| ||
Sbjct 5747 TGAAGCAGGCTGCGACGTTCTTTGGACCCGATCGTCACTTCGAAGACTTCTGGCAA 5692
Score = 136 bits (150), Expect = 9e-28
Identities = 129/165 (78%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 27390 TTGTGCAGGAACTTAACCGCTGGTTTCGTGACGGAAGAGGACTTTATGTTCATGTTATTC 27449
|| |||| | || || |||||||| ||||||||||| || | | |||||| ||||| |
Sbjct 9250 TTATGCAAGTCCTCAATCGCTGGTTCCGTGACGGAAGGGGGCGTCGTGTTCACGTTATAC 9191
Query 27450 GTTGGGAGCCAGAAACACAGCGCGTTATCTATCTTCGCAAAGACTACCCGCATGAGTGCT 27509
| |||||||| ||||||||||| ||||| ||||| || | | || || |||| || |
Sbjct 9190 GCTGGGAGCCTGAAACACAGCGGGTTATTTATCTGCGTGATGGTTATCCATATGAATGTT 9131
Query 27510 TTAGTCCTTTGTGGAAATTCAGGCGTGATTTTGTTGAGTGTGAAG 27554
| || || |||||| ||||||||||||||||| ||||||||||
Sbjct 9130 TCAGCCCGTTGTGGTTGTTCAGGCGTGATTTTGTGGAGTGTGAAG 9086
>seq1689
Length=6107
Score = 98.7 bits (108), Expect = 2e-16
Identities = 131/175 (75%), Gaps = 13/175 (7%)
Strand=Plus/Minus
Query 27708 ATGGTGGGCT-GGGCGGGGGCATCGAAAGATGCGCCGGTTTCCTTGATCACCGGTTACGC 27766
|||||||| | |||||||||| ||| |||| |||||||| || ||| ||||| | ||
Sbjct 3112 ATGGTGGGATCGGGCGGGGGCGTCGTAAGACGCGCCGGTGTCAGTGAGG-CCGGTAATGC 3054
Query 27767 CAACCCCGTTCAGTT-CACCACCAGCGAAATTGCCGTTTCCGGTGGTGGAAGTATTTCAC 27825
|||| |||| | ||| ||||||| | ||||||| | ||||||||||||| || |||
Sbjct 3053 CAACTCCGTCCGGTTTCACCACCCGTGAAATTGGCATTTCCGGTGGTGG-AGATCATCAT 2995
Query 27826 CGATCA-AGGAGGCTGCCATCATGGCTACTGTCCCAGCCCTCACTCGTCTGAATG 27879
| ||| |||||||||| ||||| ||| |||||||| ||||||||
Sbjct 2994 CACTCACTGGAGGCTGCCCCTATGGCAACT------ACCCTCACT--TCTGAATG 2948
>seq132
Length=122212
Score = 89.7 bits (98), Expect = 1e-13
Identities = 56/59 (95%), Gaps = 1/59 (2%)
Strand=Plus/Minus
Query 4 GGACTGCCCGCCCCATCGtttttttATACCCGCGAAAAATGAAATTTAA-CCAGGAGTG 61
||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 119995 GGACTGCCCGCCCCATCGTTTTTTTATACCCGCGAAAAATGAAATTTAATCCGGGCGTG 119937
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 118509350978592
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