Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq223 96.9 3e-15
>seq223
Length=82600
Score = 96.9 bits (106), Expect = 3e-15
Identities = 110/145 (76%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680
|| ||||||| | || | || |||||||| || || |||||||||||||| || |||
Sbjct 42348 TTCACCAGCAAAAATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTC-TTGTATTT 42406
Query 139681 TTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739
|||||||| | | ||| | ||||| | |||||||| || | ||| | || || || |
Sbjct 42407 TTGTTTTAACGTTTTCAATGGTGTCTGACGGCTCCACTTCGAGGGTGATTGTTTTTCCAG 42466
Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764
| | |||||| ||||||||||||||
Sbjct 42467 TAAGCGTTTTAACGAATATTTGCAT 42491
Score = 84.2 bits (92), Expect = 2e-11
Identities = 107/145 (74%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680
|||||| || |||| ||||| ||||| || || || || ||||||||||| ||| | |
Sbjct 42915 TTTACCTGCGAAGATAAGACGCTGCTGGTCAGGTGGAATACCTTCTTTGTC-TTGAATCT 42973
Query 139681 TTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739
| || ||| | | || | ||||| | ||||| || |||| || | |||||||| |
Sbjct 42974 TAGTCTTAACATTCTCAATGGTGTCTGACGGCTCTACTTCAAGAGTGATAGTCTTGCCCG 43033
Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764
|||| || || ||||| ||||||||
Sbjct 43034 TCAATGTCTTGACGAAAATTTGCAT 43058
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496038229475200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |