Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq18 199 6e-46 seq63 107 3e-18 >seq18 Length=263653 Score = 199 bits (220), Expect = 6e-46 Identities = 476/728 (65%), Gaps = 59/728 (8%) Strand=Plus/Minus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 ||||||||||| ||||| | |||| || ||||| || || ||||| | ||||| || Sbjct 150701 TTTTGGTATTCGCCCACCTTTCTTTCAAAGAAATTGGTCTTACCTTCAAGCGATATCATT 150642 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 ||||| || || |||||||| | |||| || || || | | |||| ||| | | Sbjct 150641 TCCATAAAGTCGAACGGATTCTCAGCATTGTATATCTTGTCGCAGTCCAACTCAACCAAC 150582 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 || | ||| || || ||||||| ||| ||||| | | |||||||| || || || Sbjct 150581 AAACGATCGGCCACGTATTCTATGTATTGGCACATCAGTACGCAATTCATGCCGATCAGG 150522 Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908 || || ||||| ||| | ||||| || ||||| ||||||| ||||| ||| ||| || Sbjct 150521 TTGACAGGAAGTGCCTCGGTAAGGAACTCTTGCTCAATGGCGACCGCCTCTCGTATGATC 150462 Query 49909 -GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 49967 | || | | | ||| ||| | || || || ||| | ||||||||| || Sbjct 150461 TGCTCGATGCGAT-CTTTACTGGTCTTGTGTTTCAAGTGAGAAAATAACAAACATGCAAA 150403 Query 49968 ATCGCAGTGCAGACCCT----------CGT---CTCTACTAATT---------------- 49998 ||| ||||||||||||| || || || |||| Sbjct 150402 ATCACAGTGCAGACCCTAAAATGAATGCGAAAACTTTAAAAATTGCACAGCCTAATGAGC 150343 Query 49999 ---------------------AGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGC 50037 || || ||| ||| ||||| || ||||| || ||||| Sbjct 150342 AGTACCTCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGCCCTGGCATGAGACCACGT 150283 Query 50038 TTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCA 50097 || || ||||| || || || ||||| ||||||||||| || || || || |||||| Sbjct 150282 TTCTTTAGCCAGAAAATCGAAGCAAAGCTTCCAGAAAAGAATATACCCTCGACGGCGGCA 150223 Query 50098 AAGGCAACAAGTCTCTCTCCATAACTGGCG-----CTGTCATGTATCCACTTTTGAGCCC 50152 || || ||||||| |||| | | ||| | |||| |||||| | |||||| Sbjct 150222 AATGCTACAAGTCGATCTC--TGAATGGTGACTTTTTGTCCGCTATCCATCGTAGAGCCC 150165 Query 50153 AATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttttt 50212 ||||||||||||| || || || || || || || ||||| || || || | || || Sbjct 150164 AATCGGCCTTCTTCTTAACGCATGGAATGGTCTCAATGGCGTTGAACAGGTGGTGGCGTT 150105 Query 50213 CATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTT 50272 | ||||| || ||| || || |||| ||||||||||| ||||| ||||| || | Sbjct 150104 CCGCTTCATCTTGAATATACGTGTCAATCAGCAGACTATACATCTCCGAGTGAATATTCT 150045 Query 50273 CAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAA 50332 | || || || || || ||||| || || | |||||| || | ||| | ||| | ||| Sbjct 150044 CTATAGCAATTTGGAAGCCGTAAAAGCAGCGAGCCTCTGTCACCTGAATTTCCCGAGAAA 149985 Query 50333 ATCGTTCA 50340 | |||||| Sbjct 149984 AGCGTTCA 149977 >seq63 Length=178715 Score = 107 bits (118), Expect = 3e-18 Identities = 160/225 (71%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 80179 ATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTT 80236 |||||||| || |||| |||||| | | |||| | || ||||| || || ||| Sbjct 170941 ATATAGCTCCCGGTGGCTCGAATAGAATGGACGTTGA--GCCCAATTCCTCCGGCATTTT 170884 Query 80237 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCA 80296 | || || | |||||| ||| | |||||| ||||| ||||| ||||| || | ||| Sbjct 170883 TTGAAATAATCGCGCATTCTTTGAGCGTATCGTAGATTCCCTCAATGCTGTCCGCCTTCA 170824 Query 80297 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 80356 | | || ||||| || ||| || || | | |||||| | ||||| | ||||| Sbjct 170823 TTGTGAGCAGAAAGCAACTACTCAACTGTGGCTTGCAAGTTCCAGAGTTAAAAAGGGTAG 170764 Query 80357 GAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCT 80401 | |||||||| |||||||||||||| |||| ||| || || |||| Sbjct 170763 GCGAAGCGTGGGTAAACCATTTTTCTGACATTAGGTTATATGTCT 170719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718231485935840