Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq18 199 6e-46
seq63 107 3e-18
>seq18
Length=263653
Score = 199 bits (220), Expect = 6e-46
Identities = 476/728 (65%), Gaps = 59/728 (8%)
Strand=Plus/Minus
Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728
||||||||||| ||||| | |||| || ||||| || || ||||| | ||||| ||
Sbjct 150701 TTTTGGTATTCGCCCACCTTTCTTTCAAAGAAATTGGTCTTACCTTCAAGCGATATCATT 150642
Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788
||||| || || |||||||| | |||| || || || | | |||| ||| | |
Sbjct 150641 TCCATAAAGTCGAACGGATTCTCAGCATTGTATATCTTGTCGCAGTCCAACTCAACCAAC 150582
Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848
|| | ||| || || ||||||| ||| ||||| | | |||||||| || || ||
Sbjct 150581 AAACGATCGGCCACGTATTCTATGTATTGGCACATCAGTACGCAATTCATGCCGATCAGG 150522
Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908
|| || ||||| ||| | ||||| || ||||| ||||||| ||||| ||| ||| ||
Sbjct 150521 TTGACAGGAAGTGCCTCGGTAAGGAACTCTTGCTCAATGGCGACCGCCTCTCGTATGATC 150462
Query 49909 -GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 49967
| || | | | ||| ||| | || || || ||| | ||||||||| ||
Sbjct 150461 TGCTCGATGCGAT-CTTTACTGGTCTTGTGTTTCAAGTGAGAAAATAACAAACATGCAAA 150403
Query 49968 ATCGCAGTGCAGACCCT----------CGT---CTCTACTAATT---------------- 49998
||| ||||||||||||| || || || ||||
Sbjct 150402 ATCACAGTGCAGACCCTAAAATGAATGCGAAAACTTTAAAAATTGCACAGCCTAATGAGC 150343
Query 49999 ---------------------AGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGC 50037
|| || ||| ||| ||||| || ||||| || |||||
Sbjct 150342 AGTACCTCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGCCCTGGCATGAGACCACGT 150283
Query 50038 TTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCA 50097
|| || ||||| || || || ||||| ||||||||||| || || || || ||||||
Sbjct 150282 TTCTTTAGCCAGAAAATCGAAGCAAAGCTTCCAGAAAAGAATATACCCTCGACGGCGGCA 150223
Query 50098 AAGGCAACAAGTCTCTCTCCATAACTGGCG-----CTGTCATGTATCCACTTTTGAGCCC 50152
|| || ||||||| |||| | | ||| | |||| |||||| | ||||||
Sbjct 150222 AATGCTACAAGTCGATCTC--TGAATGGTGACTTTTTGTCCGCTATCCATCGTAGAGCCC 150165
Query 50153 AATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttttt 50212
||||||||||||| || || || || || || || ||||| || || || | || ||
Sbjct 150164 AATCGGCCTTCTTCTTAACGCATGGAATGGTCTCAATGGCGTTGAACAGGTGGTGGCGTT 150105
Query 50213 CATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTT 50272
| ||||| || ||| || || |||| ||||||||||| ||||| ||||| || |
Sbjct 150104 CCGCTTCATCTTGAATATACGTGTCAATCAGCAGACTATACATCTCCGAGTGAATATTCT 150045
Query 50273 CAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAA 50332
| || || || || || ||||| || || | |||||| || | ||| | ||| | |||
Sbjct 150044 CTATAGCAATTTGGAAGCCGTAAAAGCAGCGAGCCTCTGTCACCTGAATTTCCCGAGAAA 149985
Query 50333 ATCGTTCA 50340
| ||||||
Sbjct 149984 AGCGTTCA 149977
>seq63
Length=178715
Score = 107 bits (118), Expect = 3e-18
Identities = 160/225 (71%), Gaps = 4/225 (2%)
Strand=Plus/Minus
Query 80179 ATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTT 80236
|||||||| || |||| |||||| | | |||| | || ||||| || || |||
Sbjct 170941 ATATAGCTCCCGGTGGCTCGAATAGAATGGACGTTGA--GCCCAATTCCTCCGGCATTTT 170884
Query 80237 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCA 80296
| || || | |||||| ||| | |||||| ||||| ||||| ||||| || | |||
Sbjct 170883 TTGAAATAATCGCGCATTCTTTGAGCGTATCGTAGATTCCCTCAATGCTGTCCGCCTTCA 170824
Query 80297 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 80356
| | || ||||| || ||| || || | | |||||| | ||||| | |||||
Sbjct 170823 TTGTGAGCAGAAAGCAACTACTCAACTGTGGCTTGCAAGTTCCAGAGTTAAAAAGGGTAG 170764
Query 80357 GAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCT 80401
| |||||||| |||||||||||||| |||| ||| || || ||||
Sbjct 170763 GCGAAGCGTGGGTAAACCATTTTTCTGACATTAGGTTATATGTCT 170719
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718231485935840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |