Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq18 118 1e-21 >seq18 Length=263653 Score = 118 bits (130), Expect = 1e-21 Identities = 228/333 (68%), Gaps = 4/333 (1%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||||| || || || || ||| || | |||||||| | || ||||| | Sbjct 150338 CCTCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGCCCTGGCATGAGACCACGTTTCT 150279 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 ||| ||| || || | |||||| || ||||||||||| ||||| || || ||||| | Sbjct 150278 TTAGCCAGAAAATCGAAGCAAAGCTTCCAGAAAAGAATATACCCTCGACGGCGGCAAATG 150219 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14073 ||| | ||| |||| || | || ||||||| || ||||||| | |||||| || | Sbjct 150218 CTACAAGTCGATCTCTGAATGGTGACTTTTTGTCCGCTATCCATCGTAGAGCCCAATCGG 150159 Query 14074 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATT--CCTTCTCTTT 14131 || || |||| | || || ||||| || || || | | | | ||| || Sbjct 150158 CCTTCTTCTTAACGCATGGAATGGTCTCAATGGCGTTGAACAGGTGGTGGCGTTCCGCTT 150099 Query 14132 AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCAT 14191 | |||| ||| || || ||||| || | |||||||| || ||||| || || || || Sbjct 150098 CAT-CTTG-AATATACGTGTCAATCAGCAGACTATACATCTCCGAGTGAATATTCTCTAT 150041 Query 14192 AGCTATCTGAAAACCATAAAAGCATCTAGCTTC 14224 ||| || || || || |||||||| | ||| || Sbjct 150040 AGCAATTTGGAAGCCGTAAAAGCAGCGAGCCTC 150008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479703078130400