Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq18 125 7e-24 >seq18 Length=263653 Score = 125 bits (138), Expect = 7e-24 Identities = 231/335 (69%), Gaps = 4/335 (1%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||||| || || || || ||| || | |||||||| | || ||||| | Sbjct 150338 CCTCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGCCCTGGCATGAGACCACGTTTCT 150279 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 ||| ||| || || | ||| || ||| ||||||||||| ||||| || || ||||| | Sbjct 150278 TTAGCCAGAAAATCGAAGCAAAGCTTCCAGAAAAGAATATACCCTCGACGGCGGCAAATG 150219 Query 13802 CTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAG 13861 ||| ||||| |||| || | || ||||||| | ||||||| | |||||| || | Sbjct 150218 CTACAAGTCGATCTCTGAATGGTGACTTTTTGTCCGCTATCCATCGTAGAGCCCAATCGG 150159 Query 13862 AtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTT--CCTTCTCTTT 13919 || || |||| | || || || || || ||||| | || | | ||| || Sbjct 150158 CCTTCTTCTTAACGCATGGAATGGTCTCAATGGCGTTGAACAGGTGGTGGCGTTCCGCTT 150099 Query 13920 AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTAT 13979 | |||| ||| || || ||||| || | |||||||| || ||||| || || ||||| Sbjct 150098 CAT-CTTG-AATATACGTGTCAATCAGCAGACTATACATCTCCGAGTGAATATTCTCTAT 150041 Query 13980 AGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014 ||| || || || || ||||| || | ||| |||| Sbjct 150040 AGCAATTTGGAAGCCGTAAAAGCAGCGAGCCTCTG 150006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478563937311840