Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq18 125 7e-24
>seq18
Length=263653
Score = 125 bits (138), Expect = 7e-24
Identities = 231/335 (69%), Gaps = 4/335 (1%)
Strand=Plus/Minus
Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741
||||||||| || || || || ||| || | |||||||| | || ||||| |
Sbjct 150338 CCTCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGCCCTGGCATGAGACCACGTTTCT 150279
Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801
||| ||| || || | ||| || ||| ||||||||||| ||||| || || ||||| |
Sbjct 150278 TTAGCCAGAAAATCGAAGCAAAGCTTCCAGAAAAGAATATACCCTCGACGGCGGCAAATG 150219
Query 13802 CTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAG 13861
||| ||||| |||| || | || ||||||| | ||||||| | |||||| || |
Sbjct 150218 CTACAAGTCGATCTCTGAATGGTGACTTTTTGTCCGCTATCCATCGTAGAGCCCAATCGG 150159
Query 13862 AtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTT--CCTTCTCTTT 13919
|| || |||| | || || || || || ||||| | || | | ||| ||
Sbjct 150158 CCTTCTTCTTAACGCATGGAATGGTCTCAATGGCGTTGAACAGGTGGTGGCGTTCCGCTT 150099
Query 13920 AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTAT 13979
| |||| ||| || || ||||| || | |||||||| || ||||| || || |||||
Sbjct 150098 CAT-CTTG-AATATACGTGTCAATCAGCAGACTATACATCTCCGAGTGAATATTCTCTAT 150041
Query 13980 AGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014
||| || || || || ||||| || | ||| ||||
Sbjct 150040 AGCAATTTGGAAGCCGTAAAAGCAGCGAGCCTCTG 150006
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478563937311840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |