Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq18 187 3e-42
seq63 107 3e-18
>seq18
Length=263653
Score = 187 bits (206), Expect = 3e-42
Identities = 475/726 (65%), Gaps = 55/726 (8%)
Strand=Plus/Minus
Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833
||||||||||| ||||| | |||| || ||||| ||||| ||||| | ||||| ||
Sbjct 150701 TTTTGGTATTCGCCCACCTTTCTTTCAAAGAAATTGGTCTTACCTTCAAGCGATATCATT 150642
Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893
||||| || || |||||||| | |||| || || || | | |||| ||| | |
Sbjct 150641 TCCATAAAGTCGAACGGATTCTCAGCATTGTATATCTTGTCGCAGTCCAACTCAACCAAC 150582
Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953
|| | ||| || | | ||||||| ||| ||||| | | |||||||| || || ||
Sbjct 150581 AAACGATCGGCCACGTATTCTATGTATTGGCACATCAGTACGCAATTCATGCCGATCAGG 150522
Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013
|| || ||||| ||| | ||||| || ||||| ||||| | |||||| ||| ||| ||
Sbjct 150521 TTGACAGGAAGTGCCTCGGTAAGGAACTCTTGCTCAATGGCGACCGCCTCTCGTATGATC 150462
Query 42014 ----------GATCTT-ACTG--------TTTC--------------------TTCA--- 42031
|||||| |||| |||| | ||
Sbjct 150461 TGCTCGATGCGATCTTTACTGGTCTTGTGTTTCAAGTGAGAAAATAACAAACATGCAAAA 150402
Query 42032 -CTCGGTGGATAC-----AATAAATGTTTAAACATCAAACATGCGAAATCGCAGTG--CA 42083
| | ||| | || ||| |||| |||| | ||| || | | | | || ||
Sbjct 150401 TCACAGTGCAGACCCTAAAATGAATGCGAAAACTTTAAAAATTGCACAGCCTAATGAGCA 150342
Query 42084 GACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCT 42143
| ||||||||| || | || ||| ||| ||||| || ||||| || ||||| |
Sbjct 150341 GTACCTCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGCCCTGGCATGAGACCACGTT 150282
Query 42144 TTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAA 42203
| || ||||| || || || ||||| |||||||||||| || || || || || ||||
Sbjct 150281 TCTTTAGCCAGAAAATCGAAGCAAAGCTTCCAGAAAAGAATATACCCTCGACGGCGGCAA 150222
Query 42204 AGGCAATAAGTCTCTCTCCATAACCGGCAC----TGTCATGTATCCACTTTTGAGCCCAA 42259
| || | ||||| ||| | || | || |||| |||||| | ||||||||
Sbjct 150221 ATGCTACAAGTCGATCT-CTGAATGGTGACTTTTTGTCCGCTATCCATCGTAGAGCCCAA 150163
Query 42260 TCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCA 42319
||||||||||| || || || || || || || ||||| || || || | || |||
Sbjct 150162 TCGGCCTTCTTCTTAACGCATGGAATGGTCTCAATGGCGTTGAACAGGTGGTGGCGTTCC 150103
Query 42320 TTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCA 42379
||||| || ||| || || |||| ||||||||||| || || ||||| || ||
Sbjct 150102 GCTTCATCTTGAATATACGTGTCAATCAGCAGACTATACATCTCCGAGTGAATATTCTCT 150043
Query 42380 ATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAAT 42439
|| || || || || ||||| || || | ||||| || ||||| | ||| | ||||
Sbjct 150042 ATAGCAATTTGGAAGCCGTAAAAGCAGCGAGCCTCTGTCACCTGAATTTCCCGAGAAAAG 149983
Query 42440 CGTTCA 42445
||||||
Sbjct 149982 CGTTCA 149977
>seq63
Length=178715
Score = 107 bits (118), Expect = 3e-18
Identities = 160/225 (71%), Gaps = 4/225 (2%)
Strand=Plus/Minus
Query 72262 ATATAGCTTCCACTGGCACGAATAT--TGCTAATTGATAGACCTATTCCCCCTGCCATTT 72319
|||||||| || |||| |||||| || |||| | || ||||| || || |||
Sbjct 170941 ATATAGCTCCCGGTGGCTCGAATAGAATGGACGTTGA--GCCCAATTCCTCCGGCATTTT 170884
Query 72320 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA 72379
| || || | |||||| ||| | |||||| ||||| ||||| || || || || |||
Sbjct 170883 TTGAAATAATCGCGCATTCTTTGAGCGTATCGTAGATTCCCTCAATGCTGTCCGCCTTCA 170824
Query 72380 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 72439
| | || ||||| || ||| || || | | |||||| | ||||| | |||||
Sbjct 170823 TTGTGAGCAGAAAGCAACTACTCAACTGTGGCTTGCAAGTTCCAGAGTTAAAAAGGGTAG 170764
Query 72440 GAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCT 72484
| |||||||| |||||||||||||| |||| ||| || || ||||
Sbjct 170763 GCGAAGCGTGGGTAAACCATTTTTCTGACATTAGGTTATATGTCT 170719
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671104334318560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |