Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq18 187 3e-42 seq63 107 3e-18 >seq18 Length=263653 Score = 187 bits (206), Expect = 3e-42 Identities = 475/726 (65%), Gaps = 55/726 (8%) Strand=Plus/Minus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 ||||||||||| ||||| | |||| || ||||| ||||| ||||| | ||||| || Sbjct 150701 TTTTGGTATTCGCCCACCTTTCTTTCAAAGAAATTGGTCTTACCTTCAAGCGATATCATT 150642 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 ||||| || || |||||||| | |||| || || || | | |||| ||| | | Sbjct 150641 TCCATAAAGTCGAACGGATTCTCAGCATTGTATATCTTGTCGCAGTCCAACTCAACCAAC 150582 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 || | ||| || | | ||||||| ||| ||||| | | |||||||| || || || Sbjct 150581 AAACGATCGGCCACGTATTCTATGTATTGGCACATCAGTACGCAATTCATGCCGATCAGG 150522 Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013 || || ||||| ||| | ||||| || ||||| ||||| | |||||| ||| ||| || Sbjct 150521 TTGACAGGAAGTGCCTCGGTAAGGAACTCTTGCTCAATGGCGACCGCCTCTCGTATGATC 150462 Query 42014 ----------GATCTT-ACTG--------TTTC--------------------TTCA--- 42031 |||||| |||| |||| | || Sbjct 150461 TGCTCGATGCGATCTTTACTGGTCTTGTGTTTCAAGTGAGAAAATAACAAACATGCAAAA 150402 Query 42032 -CTCGGTGGATAC-----AATAAATGTTTAAACATCAAACATGCGAAATCGCAGTG--CA 42083 | | ||| | || ||| |||| |||| | ||| || | | | | || || Sbjct 150401 TCACAGTGCAGACCCTAAAATGAATGCGAAAACTTTAAAAATTGCACAGCCTAATGAGCA 150342 Query 42084 GACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCT 42143 | ||||||||| || | || ||| ||| ||||| || ||||| || ||||| | Sbjct 150341 GTACCTCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGCCCTGGCATGAGACCACGTT 150282 Query 42144 TTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAA 42203 | || ||||| || || || ||||| |||||||||||| || || || || || |||| Sbjct 150281 TCTTTAGCCAGAAAATCGAAGCAAAGCTTCCAGAAAAGAATATACCCTCGACGGCGGCAA 150222 Query 42204 AGGCAATAAGTCTCTCTCCATAACCGGCAC----TGTCATGTATCCACTTTTGAGCCCAA 42259 | || | ||||| ||| | || | || |||| |||||| | |||||||| Sbjct 150221 ATGCTACAAGTCGATCT-CTGAATGGTGACTTTTTGTCCGCTATCCATCGTAGAGCCCAA 150163 Query 42260 TCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCA 42319 ||||||||||| || || || || || || || ||||| || || || | || ||| Sbjct 150162 TCGGCCTTCTTCTTAACGCATGGAATGGTCTCAATGGCGTTGAACAGGTGGTGGCGTTCC 150103 Query 42320 TTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCA 42379 ||||| || ||| || || |||| ||||||||||| || || ||||| || || Sbjct 150102 GCTTCATCTTGAATATACGTGTCAATCAGCAGACTATACATCTCCGAGTGAATATTCTCT 150043 Query 42380 ATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAAT 42439 || || || || || ||||| || || | ||||| || ||||| | ||| | |||| Sbjct 150042 ATAGCAATTTGGAAGCCGTAAAAGCAGCGAGCCTCTGTCACCTGAATTTCCCGAGAAAAG 149983 Query 42440 CGTTCA 42445 |||||| Sbjct 149982 CGTTCA 149977 >seq63 Length=178715 Score = 107 bits (118), Expect = 3e-18 Identities = 160/225 (71%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 72262 ATATAGCTTCCACTGGCACGAATAT--TGCTAATTGATAGACCTATTCCCCCTGCCATTT 72319 |||||||| || |||| |||||| || |||| | || ||||| || || ||| Sbjct 170941 ATATAGCTCCCGGTGGCTCGAATAGAATGGACGTTGA--GCCCAATTCCTCCGGCATTTT 170884 Query 72320 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA 72379 | || || | |||||| ||| | |||||| ||||| ||||| || || || || ||| Sbjct 170883 TTGAAATAATCGCGCATTCTTTGAGCGTATCGTAGATTCCCTCAATGCTGTCCGCCTTCA 170824 Query 72380 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 72439 | | || ||||| || ||| || || | | |||||| | ||||| | ||||| Sbjct 170823 TTGTGAGCAGAAAGCAACTACTCAACTGTGGCTTGCAAGTTCCAGAGTTAAAAAGGGTAG 170764 Query 72440 GAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCT 72484 | |||||||| |||||||||||||| |||| ||| || || |||| Sbjct 170763 GCGAAGCGTGGGTAAACCATTTTTCTGACATTAGGTTATATGTCT 170719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671104334318560