Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq223 93.3 4e-14
>seq223
Length=82600
Score = 93.3 bits (102), Expect = 4e-14
Identities = 109/145 (75%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100
|||||| || |||| ||||| ||||| || || || || ||||||||||| | | | |
Sbjct 42915 TTTACCTGCGAAGATAAGACGCTGCTGGTCAGGTGGAATACCTTCTTTGTC-TTGAATCT 42973
Query 143101 TTGTTTTAGC-TGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGG 143159
| || ||| | | || | ||||| | || |||||||||| ||| | |||||||| |
Sbjct 42974 TAGTCTTAACATTCTCAATGGTGTCTGACGGCTCTACTTCAAGAGTGATAGTCTTGCCCG 43033
Query 143160 TCAATGTTTTTACGAATATTTGCAT 143184
||||||| || ||||| ||||||||
Sbjct 43034 TCAATGTCTTGACGAAAATTTGCAT 43058
Score = 89.7 bits (98), Expect = 5e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102
|||| ||| | |||||||| |||||||| ||||| || ||||||||||| || ||
Sbjct 41214 TACCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGTATCTTGG 41273
Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162
|| | | || | ||||||| || || ||||| | ||| | || ||||| ||||
Sbjct 41274 CCTTCACGTTATCGATAGTGTCCGAAGGCTCCACTTCGAGAGTTATAGTTTTGCCTGTCA 41333
Query 143163 ATGTTTTTACGAATATTTGCAT 143184
||||||| || |||||||||||
Sbjct 41334 ATGTTTTGACAAATATTTGCAT 41355
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 143044 ACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTG 143103
||| || |||||| ||||||||||| || || |||||||| ||||| |||||||
Sbjct 43495 ACCGGCGAAGATCAACCGTTGCTGATCCGGGGGGATGCCTTCCTTGTCCTGAATTTTTGC 43554
Query 143104 TTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAA 143163
|||| | || |||||||||| ||||| ||||| | || | || |||||||| ||
Sbjct 43555 CTTTACGTTCTCAACCGTGTCCGAAGGTTCCACTTCTAATGTTATTGTTTTGCCGGTTAA 43614
Query 143164 TGTTTTTACGAATATTTGCAT 143184
|| || || || || |||||
Sbjct 43615 AGTCTTGACAAAAATCTGCAT 43635
Score = 84.2 bits (92), Expect = 2e-11
Identities = 107/144 (74%), Gaps = 4/144 (3%)
Strand=Plus/Plus
Query 143044 ACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC-GGTAATTTTTT 143102
||||||| |||| || || || ||||| || || || ||||||||||| ||| ||||
Sbjct 42633 ACCAGCAAAGATTAGTCGCTGTTGATCAGGCGGAATACCTTCTTTGTCTTGTA--TTTTA 42690
Query 143103 GT-TTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161
|| |||| | ||| | || |||| ||||| ||||| | || | |||||||| ||
Sbjct 42691 GTCTTTACATTTTCAATAGTATCCGAAGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTT 42750
Query 143162 AATGTTTTTACGAATATTTGCATA 143185
| ||||| |||||||| ||||||
Sbjct 42751 AGAGTTTTCACGAATATCTGCATA 42774
Score = 82.4 bits (90), Expect = 8e-11
Identities = 108/146 (74%), Gaps = 4/146 (3%)
Strand=Plus/Plus
Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC-GGTAATTT 143099
|| ||||||| | || | || |||||||| || || |||||||||||||| ||| ||
Sbjct 42348 TTCACCAGCAAAAATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGTA--TT 42405
Query 143100 TTTGTTTTAGC-TGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCG 143158
||||||||| | | ||| | ||||| | || || ||||| | || | || || ||
Sbjct 42406 TTTGTTTTAACGTTTTCAATGGTGTCTGACGGCTCCACTTCGAGGGTGATTGTTTTTCCA 42465
Query 143159 GTCAATGTTTTTACGAATATTTGCAT 143184
|| | ||||| ||||||||||||||
Sbjct 42466 GTAAGCGTTTTAACGAATATTTGCAT 42491
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506988060601920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |