Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq223 93.3 4e-14 >seq223 Length=82600 Score = 93.3 bits (102), Expect = 4e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 |||||| || |||| ||||| ||||| || || || || ||||||||||| | | | | Sbjct 42915 TTTACCTGCGAAGATAAGACGCTGCTGGTCAGGTGGAATACCTTCTTTGTC-TTGAATCT 42973 Query 143101 TTGTTTTAGC-TGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGG 143159 | || ||| | | || | ||||| | || |||||||||| ||| | |||||||| | Sbjct 42974 TAGTCTTAACATTCTCAATGGTGTCTGACGGCTCTACTTCAAGAGTGATAGTCTTGCCCG 43033 Query 143160 TCAATGTTTTTACGAATATTTGCAT 143184 ||||||| || ||||| |||||||| Sbjct 43034 TCAATGTCTTGACGAAAATTTGCAT 43058 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 |||| ||| | |||||||| |||||||| ||||| || ||||||||||| || || Sbjct 41214 TACCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGTATCTTGG 41273 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 || | | || | ||||||| || || ||||| | ||| | || ||||| |||| Sbjct 41274 CCTTCACGTTATCGATAGTGTCCGAAGGCTCCACTTCGAGAGTTATAGTTTTGCCTGTCA 41333 Query 143163 ATGTTTTTACGAATATTTGCAT 143184 ||||||| || ||||||||||| Sbjct 41334 ATGTTTTGACAAATATTTGCAT 41355 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 143044 ACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTG 143103 ||| || |||||| ||||||||||| || || |||||||| ||||| ||||||| Sbjct 43495 ACCGGCGAAGATCAACCGTTGCTGATCCGGGGGGATGCCTTCCTTGTCCTGAATTTTTGC 43554 Query 143104 TTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAA 143163 |||| | || |||||||||| ||||| ||||| | || | || |||||||| || Sbjct 43555 CTTTACGTTCTCAACCGTGTCCGAAGGTTCCACTTCTAATGTTATTGTTTTGCCGGTTAA 43614 Query 143164 TGTTTTTACGAATATTTGCAT 143184 || || || || || ||||| Sbjct 43615 AGTCTTGACAAAAATCTGCAT 43635 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 143044 ACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC-GGTAATTTTTT 143102 ||||||| |||| || || || ||||| || || || ||||||||||| ||| |||| Sbjct 42633 ACCAGCAAAGATTAGTCGCTGTTGATCAGGCGGAATACCTTCTTTGTCTTGTA--TTTTA 42690 Query 143103 GT-TTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || |||| | ||| | || |||| ||||| ||||| | || | |||||||| || Sbjct 42691 GTCTTTACATTTTCAATAGTATCCGAAGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTT 42750 Query 143162 AATGTTTTTACGAATATTTGCATA 143185 | ||||| |||||||| |||||| Sbjct 42751 AGAGTTTTCACGAATATCTGCATA 42774 Score = 82.4 bits (90), Expect = 8e-11 Identities = 108/146 (74%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC-GGTAATTT 143099 || ||||||| | || | || |||||||| || || |||||||||||||| ||| || Sbjct 42348 TTCACCAGCAAAAATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGTA--TT 42405 Query 143100 TTTGTTTTAGC-TGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCG 143158 ||||||||| | | ||| | ||||| | || || ||||| | || | || || || Sbjct 42406 TTTGTTTTAACGTTTTCAATGGTGTCTGACGGCTCCACTTCGAGGGTGATTGTTTTTCCA 42465 Query 143159 GTCAATGTTTTTACGAATATTTGCAT 143184 || | ||||| |||||||||||||| Sbjct 42466 GTAAGCGTTTTAACGAATATTTGCAT 42491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506988060601920