Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq18 127 3e-24
seq77 86.0 9e-12
>seq18
Length=263653
Score = 127 bits (140), Expect = 3e-24
Identities = 235/338 (70%), Gaps = 10/338 (3%)
Strand=Plus/Plus
Query 125221 CAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATG 125279
|||||| ||| ||||||||||| |||||||| || ||||| | |||||||| |||
Sbjct 150006 CAGAGGC-TCGCTGCTTTTACGGCTTCCAAATTGCTATAGAGAATATTCACTCGGAGATG 150064
Query 125280 TACTCTACACTGATTGACATGTACATTCGCGAT---CCGCAACGTAAACACATGCTCTTT 125336
|| | |||||||||| ||| |||| ||| || |||| | ||| || ||
Sbjct 150065 TATAGTCTGCTGATTGACACGTATATTCAAGATGAAGCGGAACGCCACCAC---CTGTTC 150121
Query 125337 AACGCAATCGACACGGTGCCGT-CTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGAT 125395
||||| || || || | || | | || | || ||||| | |||| | || |||||
Sbjct 150122 AACGCCATTGAGACCATTCCATGCGTTAAG-AAGAAGGCCGATTGGGCTCTACGATGGAT 150180
Query 125396 CGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCAT 125455
| ||| | ||||| | | | || |||| || ||||| |||||||| ||||| ||
Sbjct 150181 AGCGGACAAAAAGTCACCATTCAGAGATCGACTTGTAGCATTTGCCGCCGTCGAGGGTAT 150240
Query 125456 CTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGG 125515
|||||||| || || ||||| | || || ||||| ||||| || || |||||||| ||
Sbjct 150241 ATTCTTTTCTGGAAGCTTTGCTTCGATTTTCTGGCTAAAGAAACGTGGTCTCATGCCAGG 150300
Query 125516 ACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553
|| || || || ||| | || || ||||| ||||
Sbjct 150301 GCTCACTTTTAGCAATGAGCTCATCTCCCGAGATGAGG 150338
Score = 114 bits (126), Expect = 2e-20
Identities = 155/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 125658 ATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAG 125717
|| || |||||||| || ||||| | || || |||| | |||| |||||||| |||
Sbjct 150484 ATTGAGCAAGAGTTCCTTACCGAGGCACTTCCTGTCAACCTGATCGGCATGAATTGCGTA 150543
Query 125718 CTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGC 125777
|| |||||| | |||||||| | ||||| |||||| | || |||||| || |
Sbjct 150544 CTGATGTGCCAATACATAGAATACGTGGCCGATCGTTTGTTGGTTGAGTTGGACTGCGAC 150603
Query 125778 AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAG 125837
||||| ||||| || ||||||| || || || ||| | ||||| || || ||||||
Sbjct 150604 AAGATATACAATGCTGAGAATCCGTTCGACTTTATGGAAATGATATCGCTTGAAGGTAAG 150663
Query 125838 ACCAACTTTTTCGAGAAGAAGGTCAGCGAGTACAAA 125873
||||| || || || | ||||| |||| ||| ||
Sbjct 150664 ACCAATTTCTTTGAAAGAAAGGTGGGCGAATACCAA 150699
>seq77
Length=169284
Score = 86.0 bits (94), Expect = 9e-12
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 70339 GGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCA 70398
||| || |||||||| |||||||| ||||| |||||| ||||||| | ||||||||||||
Sbjct 43483 GGGACTTGGTGTACCATTTAACATAGCAAGTTATTCTCTGTTGACCCGCATGATTGCTCA 43542
Query 70399 CATTACCGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTT 70458
||||||| | ||| ||| || | || || | ||||| |||||| | || |
Sbjct 43543 TGTTACCGGTTTACGAGCTGGCGACTTTATTCATACGTTAGGCGATGCTCACATTTACGT 43602
Query 70459 AAATCACATCGA 70470
||| || ||||
Sbjct 43603 AAACCATCTCGA 43614
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741020701974560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |