Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq18 127 3e-24 seq77 86.0 9e-12 >seq18 Length=263653 Score = 127 bits (140), Expect = 3e-24 Identities = 235/338 (70%), Gaps = 10/338 (3%) Strand=Plus/Plus Query 125221 CAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATG 125279 |||||| ||| ||||||||||| |||||||| || ||||| | |||||||| ||| Sbjct 150006 CAGAGGC-TCGCTGCTTTTACGGCTTCCAAATTGCTATAGAGAATATTCACTCGGAGATG 150064 Query 125280 TACTCTACACTGATTGACATGTACATTCGCGAT---CCGCAACGTAAACACATGCTCTTT 125336 || | |||||||||| ||| |||| ||| || |||| | ||| || || Sbjct 150065 TATAGTCTGCTGATTGACACGTATATTCAAGATGAAGCGGAACGCCACCAC---CTGTTC 150121 Query 125337 AACGCAATCGACACGGTGCCGT-CTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGAT 125395 ||||| || || || | || | | || | || ||||| | |||| | || ||||| Sbjct 150122 AACGCCATTGAGACCATTCCATGCGTTAAG-AAGAAGGCCGATTGGGCTCTACGATGGAT 150180 Query 125396 CGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCAT 125455 | ||| | ||||| | | | || |||| || ||||| |||||||| ||||| || Sbjct 150181 AGCGGACAAAAAGTCACCATTCAGAGATCGACTTGTAGCATTTGCCGCCGTCGAGGGTAT 150240 Query 125456 CTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGG 125515 |||||||| || || ||||| | || || ||||| ||||| || || |||||||| || Sbjct 150241 ATTCTTTTCTGGAAGCTTTGCTTCGATTTTCTGGCTAAAGAAACGTGGTCTCATGCCAGG 150300 Query 125516 ACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553 || || || || ||| | || || ||||| |||| Sbjct 150301 GCTCACTTTTAGCAATGAGCTCATCTCCCGAGATGAGG 150338 Score = 114 bits (126), Expect = 2e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 125658 ATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAG 125717 || || |||||||| || ||||| | || || |||| | |||| |||||||| ||| Sbjct 150484 ATTGAGCAAGAGTTCCTTACCGAGGCACTTCCTGTCAACCTGATCGGCATGAATTGCGTA 150543 Query 125718 CTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGC 125777 || |||||| | |||||||| | ||||| |||||| | || |||||| || | Sbjct 150544 CTGATGTGCCAATACATAGAATACGTGGCCGATCGTTTGTTGGTTGAGTTGGACTGCGAC 150603 Query 125778 AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAG 125837 ||||| ||||| || ||||||| || || || ||| | ||||| || || |||||| Sbjct 150604 AAGATATACAATGCTGAGAATCCGTTCGACTTTATGGAAATGATATCGCTTGAAGGTAAG 150663 Query 125838 ACCAACTTTTTCGAGAAGAAGGTCAGCGAGTACAAA 125873 ||||| || || || | ||||| |||| ||| || Sbjct 150664 ACCAATTTCTTTGAAAGAAAGGTGGGCGAATACCAA 150699 >seq77 Length=169284 Score = 86.0 bits (94), Expect = 9e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 70339 GGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCA 70398 ||| || |||||||| |||||||| ||||| |||||| ||||||| | |||||||||||| Sbjct 43483 GGGACTTGGTGTACCATTTAACATAGCAAGTTATTCTCTGTTGACCCGCATGATTGCTCA 43542 Query 70399 CATTACCGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTT 70458 ||||||| | ||| ||| || | || || | ||||| |||||| | || | Sbjct 43543 TGTTACCGGTTTACGAGCTGGCGACTTTATTCATACGTTAGGCGATGCTCACATTTACGT 43602 Query 70459 AAATCACATCGA 70470 ||| || |||| Sbjct 43603 AAACCATCTCGA 43614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741020701974560