Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_004313.1
Length=40149
Score E
Sequences producing significant alignments: (Bits) Value
seq1066 248 2e-61
seq132 86.0 2e-12
>seq1066
Length=13853
Score = 248 bits (274), Expect = 2e-61
Identities = 233/297 (78%), Gaps = 0/297 (0%)
Strand=Plus/Minus
Query 31445 AAAACCATTGGCGCATCTGCTTACGCGTCTTCGTCAGTCTGTTTTGCCCGGCAGGAATAT 31504
|| || ||||||||||| ||| |||||||| | ||| ||| | |||| |||||||||
Sbjct 5991 AACACTATTGGCGCATCCGCTGACGCGTCTGCACCAGCGCGTTCTTCCCGACAGGAATAT 5932
Query 31505 TCACCTGAGTTCGAGCAGGCCTGGTTGGCATATCCAAAACGTGCAGGTGGAAATTCAAAA 31564
||||| || || || ||||||||| || |||||| |||||||| ||||| ||||| ||
Sbjct 5931 TCACCGGAATTTGAACAGGCCTGGCAGGAATATCCCAAACGTGCTGGTGGCAATTCCAAG 5872
Query 31565 TCAGCAGCCTACAAAGCCTGGAAAGCCCGTCTGAAAGAGGGGGTAAATGCTGAAACCATG 31624
|||||||||| ||||||||||||||||||| | | ||||| |||| | || ||||||
Sbjct 5871 TCAGCAGCCTTCAAAGCCTGGAAAGCCCGTATCAGGGAGGGAATAAAACCGGAGACCATG 5812
Query 31625 CTGGAAGGCGTAAAGCGTTATGCGGGATGGGTATCTGCAACGGGGAACAGCGGCACGCAA 31684
|| || ||||| ||||| ||||| | |||||| ||| || || || | |||||| ||
Sbjct 5811 CTTGATGGCGTGAAGCGGTATGCTGCCTGGGTACGTGCCACAGGAAATACCGGCACACAG 5752
Query 31685 TTCGTGAAACAGGCCACCACGTTTTTTGGTCCCGATCGTCATTTTGGGGAGTTATGG 31741
|||||||| ||||| | ||||| ||||| ||||||||||| || | || || |||
Sbjct 5751 TTCGTGAAGCAGGCTGCGACGTTCTTTGGACCCGATCGTCACTTCGAAGACTTCTGG 5695
Score = 141 bits (156), Expect = 2e-29
Identities = 131/166 (79%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 29794 TGCAGGAACTTAACCGCTGGTTTCGGGATGGAAGGGGACTTTATGTCCATGTCATTCGCT 29853
|||| | || || |||||||| || || |||||||| | | ||| || || || ||||
Sbjct 9247 TGCAAGTCCTCAATCGCTGGTTCCGTGACGGAAGGGGGCGTCGTGTTCACGTTATACGCT 9188
Query 29854 GGGAACCAGAAACTGAGCGCGTTATCTATCTGCGCAAGGGCTATCCGCATGAGTGTTTTA 29913
|||| || ||||| |||| ||||| |||||||| | || ||||| |||| ||||| |
Sbjct 9187 GGGAGCCTGAAACACAGCGGGTTATTTATCTGCGTGATGGTTATCCATATGAATGTTTCA 9128
Query 29914 GCCCTTTGTGGAAATTCAGGCGTGATTTTGTTGAGTGTGAAGCGCC 29959
|||| |||||| ||||||||||||||||| ||||||||||||||
Sbjct 9127 GCCCGTTGTGGTTGTTCAGGCGTGATTTTGTGGAGTGTGAAGCGCC 9082
Score = 98.7 bits (108), Expect = 3e-16
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 29968 ATTGATTCTGCAATTCCGGGACGTTACACTGTTCAGGCACCTCATAAAGCGGGTGCCGGG 30027
||||||||||||| |||||||||||||||||||| ||||||| ||||| |||||||||||
Sbjct 8326 ATTGATTCTGCAAGTCCGGGACGTTACACTGTTCCGGCACCTTATAAAACGGGTGCCGGG 8267
Query 30028 CGTGGAAACCCGGAATT 30044
| | | |||||||||
Sbjct 8266 ATTTGCACCCCGGAATT 8250
>seq132
Length=122212
Score = 86.0 bits (94), Expect = 2e-12
Identities = 74/89 (83%), Gaps = 2/89 (2%)
Strand=Plus/Minus
Query 40062 GGAAGGGGCGGGTCAAATCCCTGTGA-CCTGACGTCTTCCGGACTGCCCGCCCCCTCGAA 40120
|| ||||| || |||||| ||| | ||||| | ||| |||||||||||||| |||
Sbjct 120034 GGGAGGGGGAGGCCAAATCTCTGCAATCCTGA-GCCTTAAGGACTGCCCGCCCCATCGTT 119976
Query 40121 TTTTTATACCCGCGAAAAATGAAATTTAA 40149
|||||||||||||||||||||||||||||
Sbjct 119975 TTTTTATACCCGCGAAAAATGAAATTTAA 119947
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 128348865349992
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |