Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq1066 248 2e-61 seq132 86.0 2e-12 >seq1066 Length=13853 Score = 248 bits (274), Expect = 2e-61 Identities = 233/297 (78%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 31445 AAAACCATTGGCGCATCTGCTTACGCGTCTTCGTCAGTCTGTTTTGCCCGGCAGGAATAT 31504 || || ||||||||||| ||| |||||||| | ||| ||| | |||| ||||||||| Sbjct 5991 AACACTATTGGCGCATCCGCTGACGCGTCTGCACCAGCGCGTTCTTCCCGACAGGAATAT 5932 Query 31505 TCACCTGAGTTCGAGCAGGCCTGGTTGGCATATCCAAAACGTGCAGGTGGAAATTCAAAA 31564 ||||| || || || ||||||||| || |||||| |||||||| ||||| ||||| || Sbjct 5931 TCACCGGAATTTGAACAGGCCTGGCAGGAATATCCCAAACGTGCTGGTGGCAATTCCAAG 5872 Query 31565 TCAGCAGCCTACAAAGCCTGGAAAGCCCGTCTGAAAGAGGGGGTAAATGCTGAAACCATG 31624 |||||||||| ||||||||||||||||||| | | ||||| |||| | || |||||| Sbjct 5871 TCAGCAGCCTTCAAAGCCTGGAAAGCCCGTATCAGGGAGGGAATAAAACCGGAGACCATG 5812 Query 31625 CTGGAAGGCGTAAAGCGTTATGCGGGATGGGTATCTGCAACGGGGAACAGCGGCACGCAA 31684 || || ||||| ||||| ||||| | |||||| ||| || || || | |||||| || Sbjct 5811 CTTGATGGCGTGAAGCGGTATGCTGCCTGGGTACGTGCCACAGGAAATACCGGCACACAG 5752 Query 31685 TTCGTGAAACAGGCCACCACGTTTTTTGGTCCCGATCGTCATTTTGGGGAGTTATGG 31741 |||||||| ||||| | ||||| ||||| ||||||||||| || | || || ||| Sbjct 5751 TTCGTGAAGCAGGCTGCGACGTTCTTTGGACCCGATCGTCACTTCGAAGACTTCTGG 5695 Score = 141 bits (156), Expect = 2e-29 Identities = 131/166 (79%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 29794 TGCAGGAACTTAACCGCTGGTTTCGGGATGGAAGGGGACTTTATGTCCATGTCATTCGCT 29853 |||| | || || |||||||| || || |||||||| | | ||| || || || |||| Sbjct 9247 TGCAAGTCCTCAATCGCTGGTTCCGTGACGGAAGGGGGCGTCGTGTTCACGTTATACGCT 9188 Query 29854 GGGAACCAGAAACTGAGCGCGTTATCTATCTGCGCAAGGGCTATCCGCATGAGTGTTTTA 29913 |||| || ||||| |||| ||||| |||||||| | || ||||| |||| ||||| | Sbjct 9187 GGGAGCCTGAAACACAGCGGGTTATTTATCTGCGTGATGGTTATCCATATGAATGTTTCA 9128 Query 29914 GCCCTTTGTGGAAATTCAGGCGTGATTTTGTTGAGTGTGAAGCGCC 29959 |||| |||||| ||||||||||||||||| |||||||||||||| Sbjct 9127 GCCCGTTGTGGTTGTTCAGGCGTGATTTTGTGGAGTGTGAAGCGCC 9082 Score = 98.7 bits (108), Expect = 3e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 29968 ATTGATTCTGCAATTCCGGGACGTTACACTGTTCAGGCACCTCATAAAGCGGGTGCCGGG 30027 ||||||||||||| |||||||||||||||||||| ||||||| ||||| ||||||||||| Sbjct 8326 ATTGATTCTGCAAGTCCGGGACGTTACACTGTTCCGGCACCTTATAAAACGGGTGCCGGG 8267 Query 30028 CGTGGAAACCCGGAATT 30044 | | | ||||||||| Sbjct 8266 ATTTGCACCCCGGAATT 8250 >seq132 Length=122212 Score = 86.0 bits (94), Expect = 2e-12 Identities = 74/89 (83%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 40062 GGAAGGGGCGGGTCAAATCCCTGTGA-CCTGACGTCTTCCGGACTGCCCGCCCCCTCGAA 40120 || ||||| || |||||| ||| | ||||| | ||| |||||||||||||| ||| Sbjct 120034 GGGAGGGGGAGGCCAAATCTCTGCAATCCTGA-GCCTTAAGGACTGCCCGCCCCATCGTT 119976 Query 40121 TTTTTATACCCGCGAAAAATGAAATTTAA 40149 ||||||||||||||||||||||||||||| Sbjct 119975 TTTTTATACCCGCGAAAAATGAAATTTAA 119947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128348865349992