Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_004913.3
Length=59866
Score E
Sequences producing significant alignments: (Bits) Value
seq974 320 6e-83
seq1066 123 1e-23
>seq974
Length=15858
Score = 320 bits (354), Expect = 6e-83
Identities = 560/810 (69%), Gaps = 4/810 (0%)
Strand=Plus/Minus
Query 32026 TCAGGCATCCATGCACCATAAACATTGTAGACCATGCTGGCGCTGGAGTGCCCCATCTGT 32085
|||| ||||||||| || || |||||| | ||||| ||| || | |||||||||||
Sbjct 809 TCAGTCATCCATGCTCCGTATACATTGAACACCATCTGGGCACTTGCATGCCCCATCTGG 750
Query 32086 GATGCAATAAATGTCGGGTTTGCTCCGGAAGATAAAGCCCAGCACGCATAGGTATGGCGT 32145
||||| || | ||||||||||||| |||||| | |||||||||||| || || |||
Sbjct 749 CTGGCAATGAAGCTTGGGTTTGCTCCGGCAGATAATGACCAGCACGCATAAGTGTGTCGT 690
Query 32146 GACTGATACGCTTTACGGGATCGGATACCCGCTCTTTTTATTGCTGAATCCCATGTCGCT 32205
||||| || ||||| ||| | ||| ||||| | || || |||| ||||||| |
Sbjct 689 GACTGGTATGCTTTCCGGTGCCTGATGCCCGCACGCTTAATGGCTGTTTCCCATGAGTCG 630
Query 32206 CCGATGGAGCTTACCGCGTAGTTAATACCCGCCT-TGTGATTCTTGCGAACGATTTGCGG 32264
|| ||||| |||| |||| ||| ||| ||| | || || || | ||| | || ||
Sbjct 629 CCAATGGAATCTACCTTGTAGATAAAACCTACCTGTTTGCTT-TTTCTAACCACCTGGGG 571
Query 32265 ACAGAAAACAAAAGTGCACTCGTGCAAAATTGTTCTTCCGTACTCGCGTAATTGAACAGT 32324
|| || ||||| || || || | || | ||| || || |||| |||||| |
Sbjct 570 GTTAAATACGAAAGTACATTCATGATTCACTGAACGTCCATATTCACGTAGTTGAACCTT 511
Query 32325 GATCTGATGCTGCCTGCTAAGACGAGTAAGCATCGCCTGGTTTTTAAGTGCTTCAATTGC 32384
||| || |||||| | | || | || | ||||| ||||| || | || ||
Sbjct 510 GATGTGGTGCTGCTTACCCAGTCTTGTCATTTCAGCCTGATTTTTCAGGACACTGATAGC 451
Query 32385 TGGTGCCAGAAGATGTATAACCCGGTTAGTGCCTGCGTCGGTCTTTGGTAGCGTAAAATC 32444
|| | |||||| | ||||| ||| || | ||| || || || ||||| || || ||
Sbjct 450 GGGCTGGATAAGATGCACAACCCTGTTTGTACTTGCTTCAGTTTTAGGTAGAGTGAACTC 391
Query 32445 ACCTATTTTTGTAAAATTTCGTCGCACTGTTATCGTGCCAGCTTTCAGGTCGATATCCTC 32504
||| | ||| ||| |||| || | | || || || || |||||||| |||||||| ||
Sbjct 390 ACCGAGTTTCGTATAATTGCGCCTGATAGTAATAGTTCCTGCTTTCAGATCGATATCTTC 331
Query 32505 CCATGCAAGTGCGGCAATTTCACCGTGTCGCATCCCTGTAAAAACAGCCACTGTCCAGAG 32564
||| || || | | | | ||||||||| ||||| ||||| | ||||||| || ||| ||
Sbjct 330 CCAGGCCAGGGAGACCAGTTCACCGTGACGCATTCCTGTGTACACAGCCAATGACCACAG 271
Query 32565 GTTTTTGGTCTGTTGATGATGGCAGGCATCAATGAGACGGCTAAACTCATCTCTGGTCAG 32624
|||||| ||||| ||||| |||| ||||| || || || |||| || || | || ||
Sbjct 270 GTTTTTCGTCTGCTGATGTCGGCAAGCATCTATCAGGCGAATAAATTCGTCACGAGTTAG 211
Query 32625 TGGATCCGGCACTGGTTTTGATTTCCTCAGCGGTGTTATTGAATTAAACGGGTTTTTCTC 32684
||||| ||| ||| | | | | | || || | ||| | || || ||| ||
Sbjct 210 CGGATCTGGCTCTGCCCTGGCTCTTTTAAGAGGCTTAATTCCCTGGAAGGGATTTGCTTC 151
Query 32685 CAGATACCCGTTTTCGGCGGCAAAGCTG-AACATTCCGGCTGTTGTTGTCATGTAATAGT 32743
| || |||| || || ||||| ||| |||||||| || |||| ||||||||||| |
Sbjct 150 TAAGTAACCGTGATCTGCAGCAAA-CTGAAACATTCCAGCGATTGTCGTCATGTAATAAT 92
Query 32744 TCACTGTGGGTACGGTTCTTCCTTTTCGGGACGTGCTGGTTTTCCTGCTTCCCTTTTCCC 32803
| || || ||| | | ||||||| | | || ||||| | || | ||
Sbjct 91 TTACAGTAACGACGCTCCGTCCTTTTGCTGCTGCTTTGTTTTTCGTTGAATTCTGATACC 32
Query 32804 CGGTCAGTAAATCTTTCCTGATAAACAGCA 32833
||||||| ||||||||||||||| ||||||
Sbjct 31 CGGTCAGCAAATCTTTCCTGATATACAGCA 2
>seq1066
Length=13853
Score = 123 bits (136), Expect = 1e-23
Identities = 118/151 (78%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 50375 CTGATGCGTGATATCCGGCAGGTTCTTGAGTGCTGGGGGGCATGGGCGGCAAATAACCAT 50434
|||||||||||||| | ||||||||| | ||||||||||||| ||||||||| ||
Sbjct 3056 CTGATGCGTGATATTCAAATGGTTCTTGAACGTTGGGGGGCATGGGTGGCAAATAATCAC 2997
Query 50435 GAGGATGTGACCTGGTCACCCATTGCCGCCGGATTTAAGGGACTGATCCCCGAAAAAGTA 50494
||||||||| |||||| | |||| || || ||||||||| | ||||| ||||||
Sbjct 2996 GAGGATGTGGAATGGTCATCTGTTGCTGCAGGTTTTAAGGGATTAATCCCTTCGAAAGTA 2937
Query 50495 AAATCACGCCCGCAGTGCTGTGACGATGATG 50525
||||| |||||||| || | || || ||||
Sbjct 2936 AAATCCCGCCCGCAATGTAGCGATGACGATG 2906
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 191440151483616
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |