Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_004913.3 Length=59866 Score E Sequences producing significant alignments: (Bits) Value seq974 320 6e-83 seq1066 123 1e-23 >seq974 Length=15858 Score = 320 bits (354), Expect = 6e-83 Identities = 560/810 (69%), Gaps = 4/810 (0%) Strand=Plus/Minus Query 32026 TCAGGCATCCATGCACCATAAACATTGTAGACCATGCTGGCGCTGGAGTGCCCCATCTGT 32085 |||| ||||||||| || || |||||| | ||||| ||| || | ||||||||||| Sbjct 809 TCAGTCATCCATGCTCCGTATACATTGAACACCATCTGGGCACTTGCATGCCCCATCTGG 750 Query 32086 GATGCAATAAATGTCGGGTTTGCTCCGGAAGATAAAGCCCAGCACGCATAGGTATGGCGT 32145 ||||| || | ||||||||||||| |||||| | |||||||||||| || || ||| Sbjct 749 CTGGCAATGAAGCTTGGGTTTGCTCCGGCAGATAATGACCAGCACGCATAAGTGTGTCGT 690 Query 32146 GACTGATACGCTTTACGGGATCGGATACCCGCTCTTTTTATTGCTGAATCCCATGTCGCT 32205 ||||| || ||||| ||| | ||| ||||| | || || |||| ||||||| | Sbjct 689 GACTGGTATGCTTTCCGGTGCCTGATGCCCGCACGCTTAATGGCTGTTTCCCATGAGTCG 630 Query 32206 CCGATGGAGCTTACCGCGTAGTTAATACCCGCCT-TGTGATTCTTGCGAACGATTTGCGG 32264 || ||||| |||| |||| ||| ||| ||| | || || || | ||| | || || Sbjct 629 CCAATGGAATCTACCTTGTAGATAAAACCTACCTGTTTGCTT-TTTCTAACCACCTGGGG 571 Query 32265 ACAGAAAACAAAAGTGCACTCGTGCAAAATTGTTCTTCCGTACTCGCGTAATTGAACAGT 32324 || || ||||| || || || | || | ||| || || |||| |||||| | Sbjct 570 GTTAAATACGAAAGTACATTCATGATTCACTGAACGTCCATATTCACGTAGTTGAACCTT 511 Query 32325 GATCTGATGCTGCCTGCTAAGACGAGTAAGCATCGCCTGGTTTTTAAGTGCTTCAATTGC 32384 ||| || |||||| | | || | || | ||||| ||||| || | || || Sbjct 510 GATGTGGTGCTGCTTACCCAGTCTTGTCATTTCAGCCTGATTTTTCAGGACACTGATAGC 451 Query 32385 TGGTGCCAGAAGATGTATAACCCGGTTAGTGCCTGCGTCGGTCTTTGGTAGCGTAAAATC 32444 || | |||||| | ||||| ||| || | ||| || || || ||||| || || || Sbjct 450 GGGCTGGATAAGATGCACAACCCTGTTTGTACTTGCTTCAGTTTTAGGTAGAGTGAACTC 391 Query 32445 ACCTATTTTTGTAAAATTTCGTCGCACTGTTATCGTGCCAGCTTTCAGGTCGATATCCTC 32504 ||| | ||| ||| |||| || | | || || || || |||||||| |||||||| || Sbjct 390 ACCGAGTTTCGTATAATTGCGCCTGATAGTAATAGTTCCTGCTTTCAGATCGATATCTTC 331 Query 32505 CCATGCAAGTGCGGCAATTTCACCGTGTCGCATCCCTGTAAAAACAGCCACTGTCCAGAG 32564 ||| || || | | | | ||||||||| ||||| ||||| | ||||||| || ||| || Sbjct 330 CCAGGCCAGGGAGACCAGTTCACCGTGACGCATTCCTGTGTACACAGCCAATGACCACAG 271 Query 32565 GTTTTTGGTCTGTTGATGATGGCAGGCATCAATGAGACGGCTAAACTCATCTCTGGTCAG 32624 |||||| ||||| ||||| |||| ||||| || || || |||| || || | || || Sbjct 270 GTTTTTCGTCTGCTGATGTCGGCAAGCATCTATCAGGCGAATAAATTCGTCACGAGTTAG 211 Query 32625 TGGATCCGGCACTGGTTTTGATTTCCTCAGCGGTGTTATTGAATTAAACGGGTTTTTCTC 32684 ||||| ||| ||| | | | | | || || | ||| | || || ||| || Sbjct 210 CGGATCTGGCTCTGCCCTGGCTCTTTTAAGAGGCTTAATTCCCTGGAAGGGATTTGCTTC 151 Query 32685 CAGATACCCGTTTTCGGCGGCAAAGCTG-AACATTCCGGCTGTTGTTGTCATGTAATAGT 32743 | || |||| || || ||||| ||| |||||||| || |||| ||||||||||| | Sbjct 150 TAAGTAACCGTGATCTGCAGCAAA-CTGAAACATTCCAGCGATTGTCGTCATGTAATAAT 92 Query 32744 TCACTGTGGGTACGGTTCTTCCTTTTCGGGACGTGCTGGTTTTCCTGCTTCCCTTTTCCC 32803 | || || ||| | | ||||||| | | || ||||| | || | || Sbjct 91 TTACAGTAACGACGCTCCGTCCTTTTGCTGCTGCTTTGTTTTTCGTTGAATTCTGATACC 32 Query 32804 CGGTCAGTAAATCTTTCCTGATAAACAGCA 32833 ||||||| ||||||||||||||| |||||| Sbjct 31 CGGTCAGCAAATCTTTCCTGATATACAGCA 2 >seq1066 Length=13853 Score = 123 bits (136), Expect = 1e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 50375 CTGATGCGTGATATCCGGCAGGTTCTTGAGTGCTGGGGGGCATGGGCGGCAAATAACCAT 50434 |||||||||||||| | ||||||||| | ||||||||||||| ||||||||| || Sbjct 3056 CTGATGCGTGATATTCAAATGGTTCTTGAACGTTGGGGGGCATGGGTGGCAAATAATCAC 2997 Query 50435 GAGGATGTGACCTGGTCACCCATTGCCGCCGGATTTAAGGGACTGATCCCCGAAAAAGTA 50494 ||||||||| |||||| | |||| || || ||||||||| | ||||| |||||| Sbjct 2996 GAGGATGTGGAATGGTCATCTGTTGCTGCAGGTTTTAAGGGATTAATCCCTTCGAAAGTA 2937 Query 50495 AAATCACGCCCGCAGTGCTGTGACGATGATG 50525 ||||| |||||||| || | || || |||| Sbjct 2936 AAATCCCGCCCGCAATGTAGCGATGACGATG 2906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191440151483616