Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_004928.1
Length=167560
Score E
Sequences producing significant alignments: (Bits) Value
seq732 82.4 8e-11
>seq732
Length=24842
Score = 82.4 bits (90), Expect = 8e-11
Identities = 199/299 (67%), Gaps = 12/299 (4%)
Strand=Plus/Minus
Query 46456 ATGTCAGGATACATTCTTTTGCTTGCGCACTCTAACGCAAGTTGTTTAATATCATAGTTC 46515
|| || |||||||| | |||||||||||||| | ||| || ||||| || || ||||||
Sbjct 447 ATATCCGGATACATGCGCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTC 388
Query 46516 GGATCATCTTTATAAAGATTAACACCTTCTTCAA---CAAACATAACAAGTTTAGGAAAA 46572
||||| |||| | | | || | ||| || || ||||| || ||||| || ||
Sbjct 387 GGATCGCCTTTTTTATGGTTCAGACCATCGCGAATCGCAAAC---ACCAGTTTCGGGAAC 331
Query 46573 ATAGGAGTTATTCCATCACGACCAAGACCTTTAATGCGGTTTTTAAGAATTGCTTTCTGA 46632
| | |||| | | | ||| || ||| || ||||| || || | || ||||
Sbjct 330 ACCGCAGTTTTACGGTTTTTACCGAGGCCTGCGATACGGTTACGCAGGATAGATTCCTGA 271
Query 46633 ATCATTCG---TTCAGTCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTT 46689
|||| || ||| |||| || ||| |||||| || |||||||| |||||
Sbjct 270 ATCAGGCGCGATTC---CCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGCGTC 214
Query 46690 TGTCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTA 46748
|| ||||| | | || || |||||||| || || | ||||| ||||||||
Sbjct 213 TGACCGTTGGCGGTGTGCAGGGTGTTTACTTCGTACTCCAGCGACTGGAAGGCATCGTA 155
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 536036151475200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |