Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_005066.1 Length=164018 Score E Sequences producing significant alignments: (Bits) Value seq732 118 1e-21 >seq732 Length=24842 Score = 118 bits (130), Expect = 1e-21 Identities = 303/453 (67%), Gaps = 20/453 (4%) Strand=Plus/Minus Query 35414 AGGGCAATACGCGGAAGATTTAGAGTCACAACACCTAAGTTATTACGTCCGTCTAATACT 35473 || ||||||||||| || || || | | || || | ||| ||||| || || | Sbjct 606 AGAGCAATACGCGGCAGGTTCAGGCTGATCACGCCGAGGTTGTTACGACCATCGTGGATC 547 Query 35474 TCTTCGCCTTTCTCATTATGCCACACACCCAGGAAGCTACGACAACCCATCGGGCTAACC 35533 | ||||| || ||||| | |||||| || |||||||| || || ||||||||| | Sbjct 546 TGCTCGCCGTTTTCATTTTCCCACACGCCGAGGAAGCTGCGGCAGCCCATCGGGGTTTTA 487 Query 35534 GGAACACTAGATCCGGTGAT----ACTACGGTTATTCTTCG--CAGAGATATAATCAGGG 35587 ||| || ||||||| ||||| | || | | ||| ||||| | || Sbjct 486 --AAC----GAACCGGTGACTTTCACTACC--TGATCGTAGTTCAG-GATAT---CCGGA 439 Query 35588 TAAAGACGCTTACTAGAACATTCCAATGCAAGTTGCTTAATGTCGTAGTTCGGATCTTCT 35647 || | ||||| || | || |||| || || || || ||||||||||||||||| || Sbjct 438 TACATGCGCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTCGGATCGCCT 379 Query 35648 GGTTTAAGGTTTAATCCTTCTTCTAAGAAC-ATCACCAGCTTAGGAAACACCGGAGTTAT 35706 |||| |||| | || || | || | | |||||| || || ||||||| |||| | Sbjct 378 TTTTTATGGTTCAGACCATC-GCGAATCGCAAACACCAGTTTCGGGAACACCGCAGTTTT 320 Query 35707 ACCATCTTTACCTAAACCTTTAGTTCGAACTTTCAGGATCGCTTTCTGAATCAGTTTTTC 35766 || | |||||| | ||| | || |||||| | || ||||||||| Sbjct 319 ACGGTTTTTACCGAGGCCTGCGATACGGTTACGCAGGATAGATTCCTGAATCAGGCGCGA 260 Query 35767 TTCCCAGCTAGTACCCATACCAAAGGTTAAAGTCACAAAAGGCGTTTGACCGTTGGTGGA 35826 ||||||||| || |||| |||||| || || ||||| ||||| |||||||||| || Sbjct 259 TTCCCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGCGTCTGACCGTTGGCGGT 200 Query 35827 GAACAAAGTGTTGATCTCATATTCCAACGCCTG 35859 | || ||||| | || || |||| || ||| Sbjct 199 GTGCAGGGTGTTTACTTCGTACTCCAGCGACTG 167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 524702340297280