Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_005066.1
Length=164018
Score E
Sequences producing significant alignments: (Bits) Value
seq732 118 1e-21
>seq732
Length=24842
Score = 118 bits (130), Expect = 1e-21
Identities = 303/453 (67%), Gaps = 20/453 (4%)
Strand=Plus/Minus
Query 35414 AGGGCAATACGCGGAAGATTTAGAGTCACAACACCTAAGTTATTACGTCCGTCTAATACT 35473
|| ||||||||||| || || || | | || || | ||| ||||| || || |
Sbjct 606 AGAGCAATACGCGGCAGGTTCAGGCTGATCACGCCGAGGTTGTTACGACCATCGTGGATC 547
Query 35474 TCTTCGCCTTTCTCATTATGCCACACACCCAGGAAGCTACGACAACCCATCGGGCTAACC 35533
| ||||| || ||||| | |||||| || |||||||| || || ||||||||| |
Sbjct 546 TGCTCGCCGTTTTCATTTTCCCACACGCCGAGGAAGCTGCGGCAGCCCATCGGGGTTTTA 487
Query 35534 GGAACACTAGATCCGGTGAT----ACTACGGTTATTCTTCG--CAGAGATATAATCAGGG 35587
||| || ||||||| ||||| | || | | ||| ||||| | ||
Sbjct 486 --AAC----GAACCGGTGACTTTCACTACC--TGATCGTAGTTCAG-GATAT---CCGGA 439
Query 35588 TAAAGACGCTTACTAGAACATTCCAATGCAAGTTGCTTAATGTCGTAGTTCGGATCTTCT 35647
|| | ||||| || | || |||| || || || || ||||||||||||||||| ||
Sbjct 438 TACATGCGCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTCGGATCGCCT 379
Query 35648 GGTTTAAGGTTTAATCCTTCTTCTAAGAAC-ATCACCAGCTTAGGAAACACCGGAGTTAT 35706
|||| |||| | || || | || | | |||||| || || ||||||| |||| |
Sbjct 378 TTTTTATGGTTCAGACCATC-GCGAATCGCAAACACCAGTTTCGGGAACACCGCAGTTTT 320
Query 35707 ACCATCTTTACCTAAACCTTTAGTTCGAACTTTCAGGATCGCTTTCTGAATCAGTTTTTC 35766
|| | |||||| | ||| | || |||||| | || |||||||||
Sbjct 319 ACGGTTTTTACCGAGGCCTGCGATACGGTTACGCAGGATAGATTCCTGAATCAGGCGCGA 260
Query 35767 TTCCCAGCTAGTACCCATACCAAAGGTTAAAGTCACAAAAGGCGTTTGACCGTTGGTGGA 35826
||||||||| || |||| |||||| || || ||||| ||||| |||||||||| ||
Sbjct 259 TTCCCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGCGTCTGACCGTTGGCGGT 200
Query 35827 GAACAAAGTGTTGATCTCATATTCCAACGCCTG 35859
| || ||||| | || || |||| || |||
Sbjct 199 GTGCAGGGTGTTTACTTCGTACTCCAGCGACTG 167
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 524702340297280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |