Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_005069.1
Length=46339
Score E
Sequences producing significant alignments: (Bits) Value
seq1066 116 1e-21
>seq1066
Length=13853
Score = 116 bits (128), Expect = 1e-21
Identities = 367/566 (65%), Gaps = 11/566 (2%)
Strand=Plus/Minus
Query 41228 TCTATGGAAAACACTGTAAAAATAAACAGTGCAAGTTTAGTACATGCCGATTCGTTGCAA 41287
|| ||| |||| ||||||||||||||||||| |||| | | || |||| ||||
Sbjct 1361 TCCATGAAAAATACTGTAAAAATAAACAGTGTTGATTTAATCAACGCTGATTGCCTGCAT 1302
Query 41288 TACATTAAAACCCTGCCCGACAATTATATCGATGCAATCATTACTGATCCCCCCTACTAC 41347
| ||| | ||||||| || ||| || || || |||| ||||| || |||| |
Sbjct 1301 TTTATTCAGTCCCTGCCTGATGATTCCATTGACCTGATTGTTACAGATCCGCCGTACTTC 1242
Query 41348 CGAGTTAAATCGAATAGTTGGGATAATCAATGGGCATCGGTTCCCGATTTTCTAGCGTGG 41407
|| ||| | || ||||| ||||| ||| | || |||| || ||||
Sbjct 1241 AAGGTGAAACCCAACGACTGGGACAATCAGTGGAAAGAGGACGAAGATTACCTTAAGTGG 1182
Query 41408 CTTGATGAGTTTTTTGCTGAATTTTGGCGGGTACTGAAACCTAATGGTTCTCTTTATTTA 41467
|| || | | | | || | || |||||||| |||||||| || |||||| |
Sbjct 1181 CTGGACCACTGTCTGGCCCAGTTCTGGCGGGTGTTGAAACCTTCCGGAAGTCTTTACCTG 1122
Query 41468 TTTTGTGGCCCCAAGTTATCGGCGGATACAGAAATATTGATGAGAGATAGGTTTAATGTG 41527
|| ||||| | | | | |||| ||||| ||||| | || | |||||||||
Sbjct 1121 TTCTGTGGTCATCGCCTGGCATCTGATATCGAAATCATGATGCGTGAACGCTTTAATGTG 1062
Query 41528 TTGAATCATATTGTTTGGGCAAAACCATCTGGCCGCTGGAAAGGGGCGAGTAAAGAGTCT 41587
|||| || ||| | ||||| || || || || |||||||| ||| | || ||
Sbjct 1061 CTGAACCACATTATCTGGGCGAAGCCGTCCGGGCGCTGGAACGGGTGCAACAAGGAAAGC 1002
Query 41588 TTCCGATCCTATTTCCCAGCTACTGAGCATGTTTTATTTGCTGAGCATTATGGCGCAGAG 41647
| || | |||||||| || || |||| || | || || || |||||| ||| |
Sbjct 1001 CTGCGGGCGTATTTCCCCGCCACAGAGCGCATTCTGTTCGCGGAACATTAT----CAGGG 946
Query 41648 G--GTTT--TGCAAAAGGGAATGCAGGTTATGCGTCAAAATGCCAAGAGCTGAAGCAGCA 41703
| || | | |||||| ||| || |||| | | || || | ||||| |||||
Sbjct 945 GCCGTATCGTCCAAAAG---ATGATGGCTATGAGGCGAAGGGCAGGGCACTGAAACAGCA 889
Query 41704 GGTATATGCCCCGCTTATTCAGTATTTTCGTGAAGCTCGTTCGCGACTCGGTATTTCGGC 41763
|| || ||||| ||| || |||||||| || ||| || || || || ||||
Sbjct 888 TGTGATGGCTCCGCTGATTTCTTACTTTCGTGATGCGCGTGCGGCTCTGGGGATAACGGC 829
Query 41764 AAAAGAAATTAATGAAGTCACAGGAA 41789
|||| | ||| ||| ||| ||||||
Sbjct 828 AAAACAGATTGCTGATGTCTCAGGAA 803
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 148155887775672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |