Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_005069.1 Length=46339 Score E Sequences producing significant alignments: (Bits) Value seq1066 116 1e-21 >seq1066 Length=13853 Score = 116 bits (128), Expect = 1e-21 Identities = 367/566 (65%), Gaps = 11/566 (2%) Strand=Plus/Minus Query 41228 TCTATGGAAAACACTGTAAAAATAAACAGTGCAAGTTTAGTACATGCCGATTCGTTGCAA 41287 || ||| |||| ||||||||||||||||||| |||| | | || |||| |||| Sbjct 1361 TCCATGAAAAATACTGTAAAAATAAACAGTGTTGATTTAATCAACGCTGATTGCCTGCAT 1302 Query 41288 TACATTAAAACCCTGCCCGACAATTATATCGATGCAATCATTACTGATCCCCCCTACTAC 41347 | ||| | ||||||| || ||| || || || |||| ||||| || |||| | Sbjct 1301 TTTATTCAGTCCCTGCCTGATGATTCCATTGACCTGATTGTTACAGATCCGCCGTACTTC 1242 Query 41348 CGAGTTAAATCGAATAGTTGGGATAATCAATGGGCATCGGTTCCCGATTTTCTAGCGTGG 41407 || ||| | || ||||| ||||| ||| | || |||| || |||| Sbjct 1241 AAGGTGAAACCCAACGACTGGGACAATCAGTGGAAAGAGGACGAAGATTACCTTAAGTGG 1182 Query 41408 CTTGATGAGTTTTTTGCTGAATTTTGGCGGGTACTGAAACCTAATGGTTCTCTTTATTTA 41467 || || | | | | || | || |||||||| |||||||| || |||||| | Sbjct 1181 CTGGACCACTGTCTGGCCCAGTTCTGGCGGGTGTTGAAACCTTCCGGAAGTCTTTACCTG 1122 Query 41468 TTTTGTGGCCCCAAGTTATCGGCGGATACAGAAATATTGATGAGAGATAGGTTTAATGTG 41527 || ||||| | | | | |||| ||||| ||||| | || | ||||||||| Sbjct 1121 TTCTGTGGTCATCGCCTGGCATCTGATATCGAAATCATGATGCGTGAACGCTTTAATGTG 1062 Query 41528 TTGAATCATATTGTTTGGGCAAAACCATCTGGCCGCTGGAAAGGGGCGAGTAAAGAGTCT 41587 |||| || ||| | ||||| || || || || |||||||| ||| | || || Sbjct 1061 CTGAACCACATTATCTGGGCGAAGCCGTCCGGGCGCTGGAACGGGTGCAACAAGGAAAGC 1002 Query 41588 TTCCGATCCTATTTCCCAGCTACTGAGCATGTTTTATTTGCTGAGCATTATGGCGCAGAG 41647 | || | |||||||| || || |||| || | || || || |||||| ||| | Sbjct 1001 CTGCGGGCGTATTTCCCCGCCACAGAGCGCATTCTGTTCGCGGAACATTAT----CAGGG 946 Query 41648 G--GTTT--TGCAAAAGGGAATGCAGGTTATGCGTCAAAATGCCAAGAGCTGAAGCAGCA 41703 | || | | |||||| ||| || |||| | | || || | ||||| ||||| Sbjct 945 GCCGTATCGTCCAAAAG---ATGATGGCTATGAGGCGAAGGGCAGGGCACTGAAACAGCA 889 Query 41704 GGTATATGCCCCGCTTATTCAGTATTTTCGTGAAGCTCGTTCGCGACTCGGTATTTCGGC 41763 || || ||||| ||| || |||||||| || ||| || || || || |||| Sbjct 888 TGTGATGGCTCCGCTGATTTCTTACTTTCGTGATGCGCGTGCGGCTCTGGGGATAACGGC 829 Query 41764 AAAAGAAATTAATGAAGTCACAGGAA 41789 |||| | ||| ||| ||| |||||| Sbjct 828 AAAACAGATTGCTGATGTCTCAGGAA 803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148155887775672