Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_005083.2
Length=244834
Score E
Sequences producing significant alignments: (Bits) Value
seq732 158 2e-33
>seq732
Length=24842
Score = 158 bits (174), Expect = 2e-33
Identities = 735/1149 (64%), Gaps = 32/1149 (3%)
Strand=Plus/Plus
Query 8099 TATGATGCGTTTCAGACTTTTGAATACCAAGTCAATACAATGCAGACTTCAAATGGTCAG 8158
|| ||||| || ||| | | || ||| |||| || || |||| || | || ||||||
Sbjct 155 TACGATGCCTTCCAGTCGCTGGAGTACGAAGTAAACACCCTGCACACCGCCAACGGTCAG 214
Query 8159 ACACCATTCACGACAATCAACTTCGGTTTAGGTACTTCGTGGGAAGAGAAACTGATTCAG 8218
|| || || || | || ||| | || || |||||| | |||||||||
Sbjct 215 ACGCCGTTTGTAACCTTTGGTTTTGGTCTGGGCACCAGCTGGGAATCGCGCCTGATTCAG 274
Query 8219 AAAAGCATTCTGCAAAATCGTATTGCTGGTCTAGGCAAGACTAAGAAAACTGCTATCTTC 8278
|| || |||| || ||||| || || || || || | |||||||| | |||
Sbjct 275 GAATCTATCCTGCGTAACCGTATCGCAGGCCTCGGTAAAAACCGTAAAACTGCGGTGTTC 334
Query 8279 CCGAAACTTGTTTTCACGTTGAAAGACGGTGTTAACTTGAAAGAAGGTGATCCTTGTTAC 8338
|||||||| || || || | || ||| | ||| ||| |||| ||||| |||
Sbjct 335 CCGAAACTGGTGTTTGCGATTCGCGATGGTCTGAACCATAAAAAAGGCGATCCGAACTAC 394
Query 8339 GGAATCAAGAAGCTTGCTCTTGAGTGTGCAAGTAAACGCATGTACCCAGACATTTTGAAC 8398
| ||||| |||| || || ||||| ||||| || |||||||| || || || |||||
Sbjct 395 GACATCAAACAGCTGGCGCTGGAGTGCGCAAGCAAGCGCATGTATCCGGATATCCTGAAC 454
Query 8399 TATGAAAAGCTAGTTGAAACAACTGGCGGATTCAAGTCGCCTATGGGATGTCGTTCATTC 8458
|| || || |||| || || || || || | || ||||| || || |||
Sbjct 455 TACGATCAGGTAGTGAAAGTCACCGGTTCGTTTAAAACCCCGATGGGCTGCCGCAGCTTC 514
Query 8459 TTGGGTGAATGGAAAAATGAAGATGGCGAAACTGTATTCGACGGTCGTAATAACTTAGGT 8518
| || | ||| |||||||| | ||||| | ||| |||||||| ||| | ||
Sbjct 515 CTCGGCGTGTGGGAAAATGAAAACGGCGAGCAGATCCACGATGGTCGTAACAACCTCGGC 574
Query 8519 GTTGTTTCTATAAACATCCCGCGTATTGCAATCGAAGCGTCGGGAGACACTGAACGTTTC 8578
|| | | ||| | ||||||||||| | ||||| || || |||| |
Sbjct 575 GTGATCAGCCTGAACCTGCCGCGTATTGCTCTGGAAGCAAAAGGCGA---TGAAGCCACC 631
Query 8579 TTCGAGATCTTGC---ACGAACGTTGTACACTAGCTTACGAA--GCGTTGATGTTGCGTA 8633
||| || ||| | |||||| || || ||| | ||| ||||| ||||
Sbjct 632 TTCTGGAAGCTGCTGGATGAACGTCTGGTGCTGGC--ACGTAAGGCGCTGATGACCCGTA 689
Query 8634 TCAAGCGTTTTGACGATGTTACTGCATCAGTTGCACCGATTCTGTACTGTGAAGGCGCTA 8693
|| ||| | || | || | || || || ||||| || || ||||| |||
Sbjct 690 TCGCTCGTCTCGAAGGCGTGAAAGCGCGCGTGGCCCCGATCCTCTATATGGAAGGTGCTT 749
Query 8694 TGGGCGTACGCTTGAA-GCCAACTGATAAAGTCAGTGAAGTGTTCAAGAACGGTCGCGCA 8752
||||| || | || || || ||| | || |||| | ||||| |||||||| ||
Sbjct 750 GTGGCGTGCGTCTCAATGCTGAC-GATGATGTTTCTGAAATCTTCAAAAACGGTCGTGCG 808
Query 8753 AGTATCTCACTCGGTTACATCGGTCTGCATGAGGCTGT-AACGCTGCT-TTCGCCTGACA 8810
||| || || ||||||||||| | || || | | ||||| ||| |||| | | |
Sbjct 809 TCTATTTCGCTGGGTTACATCGGCATCCACGAAACCATTAACGC-GCTGTTCGGCGG-CG 866
Query 8811 AAGACATGCAC-ACATTCGAGTCGCAGCACAAGCAATTCCTTGCTGAAAAGATTGTTGAG 8869
| | | || ||| |||| || | | | || | || ||||||||
Sbjct 867 AGCATGTTTACGACAA-CGAGCAGCTTCGCGCGAAAGGTATCGCC------ATTGTTGA- 918
Query 8870 ACGCTTAGAGCGT-ACACAGACGCA---TGGAAAGAACTGACTGGCTACGGATTCAGTCT 8925
||| | |||| | ||| | ||||||||| || || || || ||||||||
Sbjct 919 ACGTCT---GCGTCAGGCAGTGGATAAGTGGAAAGAAGAAACGGGTTATGGTTTCAGTCT 975
Query 8926 ATACAGCACGCCAAGCGAATCGCTATGTGATCGTTTCTGTCGTCTCGATCAAGAGAAATA 8985
||||||||||| || ||| || || || || ||||| ||||||||| | | |
Sbjct 976 CTACAGCACGCCGAGTGAAAACCTGTGCGACCGCTTCTGCCGTCTCGATACTGCTGAGTT 1035
Query 8986 CGGTATCATTACGGGTATCAACGACAAAGACTATTACACGAACTCGTTTCACTTAGATGT 9045
|| | | |||| | | ||| |||| || ||||| ||| || ||| | |||||
Sbjct 1036 TGGCGTGGTGCCGGGCGTGACCGATAAAGGTTACTACACCAACAGTTTCCACCTCGATGT 1095
Query 9046 GTTCAAGAAAGTGAATCCGTTCGAGAAGATTGATTTCGAAGCAGCATACCCAATTCATGC 9105
| ||||| ||||| |||| ||| ||||| || || ||||| | ||||| | ||
Sbjct 1096 GGAGAAGAAGGTGAACCCGTACGACAAGATCGACTTTGAAGCGCCTTACCCGCCGCTGGC 1155
Query 9106 GAATGGTGGTTTCATCTGCTATGCTGAATTCCCGAACATGCGAGACAACATCAAAGGTCT 9165
||| ||||||||||| ||||| | || | || ||||| | ||||| | || | ||
Sbjct 1156 GAACGGTGGTTTCATTTGCTACGGCGAGTATCCAAACATTCAGCACAACCTGAAGGCGCT 1215
Query 9166 AGAGCGCGTATGGGATTACGCATATAAGAAAGTTGCGTACTTCGGCACAAACACGCCGAT 9225
|| || ||||||||| ||| || | || |||| | |||||| || || |||||
Sbjct 1216 GGAAGATGTCTGGGATTACAGCTATCAGCATGTACCGTATTACGGCACCAATACACCGAT 1275
Query 9226 TGACCAGTG 9234
||| ||||
Sbjct 1276 TGATGAGTG 1284
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 783300105445440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |