Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_005083.2 Length=244834 Score E Sequences producing significant alignments: (Bits) Value seq732 158 2e-33 >seq732 Length=24842 Score = 158 bits (174), Expect = 2e-33 Identities = 735/1149 (64%), Gaps = 32/1149 (3%) Strand=Plus/Plus Query 8099 TATGATGCGTTTCAGACTTTTGAATACCAAGTCAATACAATGCAGACTTCAAATGGTCAG 8158 || ||||| || ||| | | || ||| |||| || || |||| || | || |||||| Sbjct 155 TACGATGCCTTCCAGTCGCTGGAGTACGAAGTAAACACCCTGCACACCGCCAACGGTCAG 214 Query 8159 ACACCATTCACGACAATCAACTTCGGTTTAGGTACTTCGTGGGAAGAGAAACTGATTCAG 8218 || || || || | || ||| | || || |||||| | ||||||||| Sbjct 215 ACGCCGTTTGTAACCTTTGGTTTTGGTCTGGGCACCAGCTGGGAATCGCGCCTGATTCAG 274 Query 8219 AAAAGCATTCTGCAAAATCGTATTGCTGGTCTAGGCAAGACTAAGAAAACTGCTATCTTC 8278 || || |||| || ||||| || || || || || | |||||||| | ||| Sbjct 275 GAATCTATCCTGCGTAACCGTATCGCAGGCCTCGGTAAAAACCGTAAAACTGCGGTGTTC 334 Query 8279 CCGAAACTTGTTTTCACGTTGAAAGACGGTGTTAACTTGAAAGAAGGTGATCCTTGTTAC 8338 |||||||| || || || | || ||| | ||| ||| |||| ||||| ||| Sbjct 335 CCGAAACTGGTGTTTGCGATTCGCGATGGTCTGAACCATAAAAAAGGCGATCCGAACTAC 394 Query 8339 GGAATCAAGAAGCTTGCTCTTGAGTGTGCAAGTAAACGCATGTACCCAGACATTTTGAAC 8398 | ||||| |||| || || ||||| ||||| || |||||||| || || || ||||| Sbjct 395 GACATCAAACAGCTGGCGCTGGAGTGCGCAAGCAAGCGCATGTATCCGGATATCCTGAAC 454 Query 8399 TATGAAAAGCTAGTTGAAACAACTGGCGGATTCAAGTCGCCTATGGGATGTCGTTCATTC 8458 || || || |||| || || || || || | || ||||| || || ||| Sbjct 455 TACGATCAGGTAGTGAAAGTCACCGGTTCGTTTAAAACCCCGATGGGCTGCCGCAGCTTC 514 Query 8459 TTGGGTGAATGGAAAAATGAAGATGGCGAAACTGTATTCGACGGTCGTAATAACTTAGGT 8518 | || | ||| |||||||| | ||||| | ||| |||||||| ||| | || Sbjct 515 CTCGGCGTGTGGGAAAATGAAAACGGCGAGCAGATCCACGATGGTCGTAACAACCTCGGC 574 Query 8519 GTTGTTTCTATAAACATCCCGCGTATTGCAATCGAAGCGTCGGGAGACACTGAACGTTTC 8578 || | | ||| | ||||||||||| | ||||| || || |||| | Sbjct 575 GTGATCAGCCTGAACCTGCCGCGTATTGCTCTGGAAGCAAAAGGCGA---TGAAGCCACC 631 Query 8579 TTCGAGATCTTGC---ACGAACGTTGTACACTAGCTTACGAA--GCGTTGATGTTGCGTA 8633 ||| || ||| | |||||| || || ||| | ||| ||||| |||| Sbjct 632 TTCTGGAAGCTGCTGGATGAACGTCTGGTGCTGGC--ACGTAAGGCGCTGATGACCCGTA 689 Query 8634 TCAAGCGTTTTGACGATGTTACTGCATCAGTTGCACCGATTCTGTACTGTGAAGGCGCTA 8693 || ||| | || | || | || || || ||||| || || ||||| ||| Sbjct 690 TCGCTCGTCTCGAAGGCGTGAAAGCGCGCGTGGCCCCGATCCTCTATATGGAAGGTGCTT 749 Query 8694 TGGGCGTACGCTTGAA-GCCAACTGATAAAGTCAGTGAAGTGTTCAAGAACGGTCGCGCA 8752 ||||| || | || || || ||| | || |||| | ||||| |||||||| || Sbjct 750 GTGGCGTGCGTCTCAATGCTGAC-GATGATGTTTCTGAAATCTTCAAAAACGGTCGTGCG 808 Query 8753 AGTATCTCACTCGGTTACATCGGTCTGCATGAGGCTGT-AACGCTGCT-TTCGCCTGACA 8810 ||| || || ||||||||||| | || || | | ||||| ||| |||| | | | Sbjct 809 TCTATTTCGCTGGGTTACATCGGCATCCACGAAACCATTAACGC-GCTGTTCGGCGG-CG 866 Query 8811 AAGACATGCAC-ACATTCGAGTCGCAGCACAAGCAATTCCTTGCTGAAAAGATTGTTGAG 8869 | | | || ||| |||| || | | | || | || |||||||| Sbjct 867 AGCATGTTTACGACAA-CGAGCAGCTTCGCGCGAAAGGTATCGCC------ATTGTTGA- 918 Query 8870 ACGCTTAGAGCGT-ACACAGACGCA---TGGAAAGAACTGACTGGCTACGGATTCAGTCT 8925 ||| | |||| | ||| | ||||||||| || || || || |||||||| Sbjct 919 ACGTCT---GCGTCAGGCAGTGGATAAGTGGAAAGAAGAAACGGGTTATGGTTTCAGTCT 975 Query 8926 ATACAGCACGCCAAGCGAATCGCTATGTGATCGTTTCTGTCGTCTCGATCAAGAGAAATA 8985 ||||||||||| || ||| || || || || ||||| ||||||||| | | | Sbjct 976 CTACAGCACGCCGAGTGAAAACCTGTGCGACCGCTTCTGCCGTCTCGATACTGCTGAGTT 1035 Query 8986 CGGTATCATTACGGGTATCAACGACAAAGACTATTACACGAACTCGTTTCACTTAGATGT 9045 || | | |||| | | ||| |||| || ||||| ||| || ||| | ||||| Sbjct 1036 TGGCGTGGTGCCGGGCGTGACCGATAAAGGTTACTACACCAACAGTTTCCACCTCGATGT 1095 Query 9046 GTTCAAGAAAGTGAATCCGTTCGAGAAGATTGATTTCGAAGCAGCATACCCAATTCATGC 9105 | ||||| ||||| |||| ||| ||||| || || ||||| | ||||| | || Sbjct 1096 GGAGAAGAAGGTGAACCCGTACGACAAGATCGACTTTGAAGCGCCTTACCCGCCGCTGGC 1155 Query 9106 GAATGGTGGTTTCATCTGCTATGCTGAATTCCCGAACATGCGAGACAACATCAAAGGTCT 9165 ||| ||||||||||| ||||| | || | || ||||| | ||||| | || | || Sbjct 1156 GAACGGTGGTTTCATTTGCTACGGCGAGTATCCAAACATTCAGCACAACCTGAAGGCGCT 1215 Query 9166 AGAGCGCGTATGGGATTACGCATATAAGAAAGTTGCGTACTTCGGCACAAACACGCCGAT 9225 || || ||||||||| ||| || | || |||| | |||||| || || ||||| Sbjct 1216 GGAAGATGTCTGGGATTACAGCTATCAGCATGTACCGTATTACGGCACCAATACACCGAT 1275 Query 9226 TGACCAGTG 9234 ||| |||| Sbjct 1276 TGATGAGTG 1284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783300105445440