Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq732 226 4e-54 >seq732 Length=24842 Score = 226 bits (250), Expect = 4e-54 Identities = 527/785 (67%), Gaps = 16/785 (2%) Strand=Plus/Minus Query 37692 ATCGTCATCTGGATTCAGACGTACACCGCAGGCGCCTTCGACGTAAAGAATCGGAGCCAC 37751 ||| || || | ||| ||||| || || || || ||||| | || || ||||| ||||| Sbjct 778 ATCATCGTCAGCATTGAGACGCACGCCACAAGCACCTTCCATATAGAGGATCGGGGCCAC 719 Query 37752 GCTTGCCTTAACGCCACGCAGACGATCAACACGTACCATTAGAGCTTGTTTAACTACTTC 37811 || || || ||||| |||||| | | ||| ||| || || | | | | Sbjct 718 GCGCGCTTTCACGCCTTCGAGACGAGCGATACGGGTCATCAGCGCCTTACGTGCCAGCAC 659 Query 37812 CATACGCTCTTCCAGAAGCTCCCAGAAACGCATATGATTGCCGTTTGCGTCGAGTGCGAT 37871 || ||| || ||||| |||| |||||| | || ||| ||||| || || || || Sbjct 658 CAGACGTTCATCCAGCAGCTTCCAGAAGGTGGCTTCATCGCCTTTTGCTTCCAGAGCAAT 599 Query 37872 ACGCGGCAGATTCAGAGTAACAACCCCTAGATTATTACGACCTTCGTGAACTTCATTGCC 37931 ||||||||| ||||| | | || || || || |||||||| ||||| | | | ||| Sbjct 598 ACGCGGCAGGTTCAGGCTGATCACGCCGAGGTTGTTACGACCATCGTGGATCTGCTCGCC 539 Query 37932 ATTTTCGTCTTCCCA-ACGATGCAAGAAACTGCGGCATCCCATAGGGAACTTAAAGCTGC 37990 ||||| | |||||| ||| | | ||| |||||||| ||||| ||| ||||| | Sbjct 538 GTTTTCATTTTCCCACACGCCG-AGGAAGCTGCGGCAGCCCATCGGGGTTTTAAACGAAC 480 Query 37991 CAGTTGTTTCAACAACTTTATCATAACTCAGAATATCTGGATACATACGCTTAGAAGCGC 38050 | || || || || | ||| || |||| ||||| |||||||| ||||| |||| Sbjct 479 CGGTGACTTTCACTACCTGATCGTAGTTCAGGATATCCGGATACATGCGCTTGCTTGCGC 420 Query 38051 ACTCCAGTGCCAGTTGCTTGATACGATAAAGCGGGTCAGTTGGCTTCAAGTTGTGTCCGT 38110 ||||||| ||||| || ||||| || ||| || | || ||| | || | Sbjct 419 ACTCCAGCGCCAGCTGTTTGATGTCGTAGTTCGGATCGCCTTTTTTATGGTTCAGACCAT 360 Query 38111 CTTTCAGAGCAAACACCAGTTTCGGGAACACCGGAGTGATACCCTCTTTGCCAAGTCCAG 38170 | | ||||||||||||||||||||||||| ||| ||| | ||| || || || | Sbjct 359 CGCGAATCGCAAACACCAGTTTCGGGAACACCGCAGTTTTACGGTTTTTACCGAGGCCTG 300 Query 38171 CCAGTCGAACTTTCAAGATCGCTTCCTGAATCAGTTCAGCTTCCCAGCTTTCACCCAGAC 38230 | | || || ||| | |||||||||||| | ||||||||| ||||||| Sbjct 299 CGATACGGTTACGCAGGATAGATTCCTGAATCAGGCGCGATTCCCAGCTGGTGCCCAGAC 240 Query 38231 CAAAGCCGAATG-TACAGAAGGGAGTTTGACCGTTCGCGGAGTGAAGAGTGTTCACCTCG 38289 |||| || || | |||| || || || |||||||| |||| ||| || ||||| || ||| Sbjct 239 CAAAACCAAAGGTTACA-AACGGCGTCTGACCGTTGGCGGTGTGCAGGGTGTTTACTTCG 181 Query 38290 TATTCGAGTCCCTGCATTGCATCATA-CACAGCTTTGTGAGTCTTTGCAATAGCGTATTC 38348 || || || ||| | ||||| || ||| |||| || | ||||||| | Sbjct 180 TACTCCAGCGACTGGAAGGCATCGTAGCAC-TCTTTAATGGTACGAGAGTTAGCGTAGCC 122 Query 38349 TTTCGCATCTGGAATTTTCCAAT----AACGGGCTT-CGTCCAAATGCTTTTCATGAGTC 38403 || || || || || ||||| | ||| ||| || ||| || | | | Sbjct 121 TTCGGCGTCCGGGATGTTCCACTCTTCTGCGGTCTTGCG-----ATGTTTGTTGTAGCTG 67 Query 38404 ATCTTAACATACGGTGCCAGCACTTCGTCAATACGATTAATTGTGTTGCCGCCGTAAATG 38463 | ||| |||||||||||||||| || ||||| ||||| ||| ||||||| ||||| Sbjct 66 GCGGTGACAAACGGTGCCAGCACTTCATCGATACGGTTAATGGTGGTGCCGCCATAAATA 7 Query 38464 TGACT 38468 || || Sbjct 6 TGGCT 2 Score = 154 bits (170), Expect = 2e-32 Identities = 272/394 (69%), Gaps = 2/394 (1%) Strand=Plus/Minus Query 37018 ACTTCATCCTGCTTGCCGCGATTAAATGCGCGAGAACCAGGCGCACCGAGATAACCGCAT 37077 ||||| |||||||| ||| ||||||| || | | | || ||| | ||| ||||| Sbjct 1449 ACTTCTTCCTGCTTACCGGCGTTAAATGGACGTGCATCCGGGCTACCTAAATATCCGCAC 1390 Query 37078 ACGCGACGAATAACGTTCATTTTGGTATCGTCATGATTACCACATTTAGGACATTCGTAC 37137 ||||| ||| | || || || ||||||| ||||||||||| || || | | Sbjct 1389 ACGCGGCGAGTCACCGACACACGGGAGGCGTCATGGTTACCACATTTCGGGCAAGTGAAG 1330 Query 37138 CCTTTGGAAGTAGCAGT-GAATTCACCGTGATAGCCACATTCAAAGCAAACATCAACAGG 37196 |||||| || ||| | ||| |||||| | ||||||| || |||| |||||| || Sbjct 1329 CCTTTGCTGGT-GCACTCGAACTCACCGGTAAAGCCACACTCGTAGCACTCATCAATCGG 1271 Query 37197 AGTATTTGTTCCGTAATACGGTGTGTTCAGATAAGCATAATCCCAAACGTCTTCCAACGC 37256 ||||| || |||||||||||| | | |||| |||||||| || ||||||| ||| Sbjct 1270 TGTATTGGTGCCGTAATACGGTACATGCTGATAGCTGTAATCCCAGACATCTTCCAGCGC 1211 Query 37257 TTTCAGATTATTTTTCATATTCGGATATTCTCCGTATGAAATAAATCCACCTGAACTCAG 37316 ||||| || | | || || ||||| || ||||| |||| || ||||| ||| Sbjct 1210 CTTCAGGTTGTGCTGAATGTTTGGATACTCGCCGTAGCAAATGAAACCACCGTTCGCCAG 1151 Query 37317 AGGAATAAATTGCTTTTCAAAATCAATCTTGTCATAAGGATTGGTATTATGACGGACGTC 37376 || | || |||||| || |||||||| || || || || | || || Sbjct 1150 CGGCGGGTAAGGCGCTTCAAAGTCGATCTTGTCGTACGGGTTCACCTTCTTCTCCACATC 1091 Query 37377 GAGGTGGAAGCTGTTTGTGTAATAATCTTTATCG 37410 ||||||||| ||||| ||||| ||| |||||||| Sbjct 1090 GAGGTGGAAACTGTTGGTGTAGTAACCTTTATCG 1057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 746182033829440