Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_005260.1
Length=233234
Score E
Sequences producing significant alignments: (Bits) Value
seq732 226 4e-54
>seq732
Length=24842
Score = 226 bits (250), Expect = 4e-54
Identities = 527/785 (67%), Gaps = 16/785 (2%)
Strand=Plus/Minus
Query 37692 ATCGTCATCTGGATTCAGACGTACACCGCAGGCGCCTTCGACGTAAAGAATCGGAGCCAC 37751
||| || || | ||| ||||| || || || || ||||| | || || ||||| |||||
Sbjct 778 ATCATCGTCAGCATTGAGACGCACGCCACAAGCACCTTCCATATAGAGGATCGGGGCCAC 719
Query 37752 GCTTGCCTTAACGCCACGCAGACGATCAACACGTACCATTAGAGCTTGTTTAACTACTTC 37811
|| || || ||||| |||||| | | ||| ||| || || | | | |
Sbjct 718 GCGCGCTTTCACGCCTTCGAGACGAGCGATACGGGTCATCAGCGCCTTACGTGCCAGCAC 659
Query 37812 CATACGCTCTTCCAGAAGCTCCCAGAAACGCATATGATTGCCGTTTGCGTCGAGTGCGAT 37871
|| ||| || ||||| |||| |||||| | || ||| ||||| || || || ||
Sbjct 658 CAGACGTTCATCCAGCAGCTTCCAGAAGGTGGCTTCATCGCCTTTTGCTTCCAGAGCAAT 599
Query 37872 ACGCGGCAGATTCAGAGTAACAACCCCTAGATTATTACGACCTTCGTGAACTTCATTGCC 37931
||||||||| ||||| | | || || || || |||||||| ||||| | | | |||
Sbjct 598 ACGCGGCAGGTTCAGGCTGATCACGCCGAGGTTGTTACGACCATCGTGGATCTGCTCGCC 539
Query 37932 ATTTTCGTCTTCCCA-ACGATGCAAGAAACTGCGGCATCCCATAGGGAACTTAAAGCTGC 37990
||||| | |||||| ||| | | ||| |||||||| ||||| ||| ||||| |
Sbjct 538 GTTTTCATTTTCCCACACGCCG-AGGAAGCTGCGGCAGCCCATCGGGGTTTTAAACGAAC 480
Query 37991 CAGTTGTTTCAACAACTTTATCATAACTCAGAATATCTGGATACATACGCTTAGAAGCGC 38050
| || || || || | ||| || |||| ||||| |||||||| ||||| ||||
Sbjct 479 CGGTGACTTTCACTACCTGATCGTAGTTCAGGATATCCGGATACATGCGCTTGCTTGCGC 420
Query 38051 ACTCCAGTGCCAGTTGCTTGATACGATAAAGCGGGTCAGTTGGCTTCAAGTTGTGTCCGT 38110
||||||| ||||| || ||||| || ||| || | || ||| | || |
Sbjct 419 ACTCCAGCGCCAGCTGTTTGATGTCGTAGTTCGGATCGCCTTTTTTATGGTTCAGACCAT 360
Query 38111 CTTTCAGAGCAAACACCAGTTTCGGGAACACCGGAGTGATACCCTCTTTGCCAAGTCCAG 38170
| | ||||||||||||||||||||||||| ||| ||| | ||| || || || |
Sbjct 359 CGCGAATCGCAAACACCAGTTTCGGGAACACCGCAGTTTTACGGTTTTTACCGAGGCCTG 300
Query 38171 CCAGTCGAACTTTCAAGATCGCTTCCTGAATCAGTTCAGCTTCCCAGCTTTCACCCAGAC 38230
| | || || ||| | |||||||||||| | ||||||||| |||||||
Sbjct 299 CGATACGGTTACGCAGGATAGATTCCTGAATCAGGCGCGATTCCCAGCTGGTGCCCAGAC 240
Query 38231 CAAAGCCGAATG-TACAGAAGGGAGTTTGACCGTTCGCGGAGTGAAGAGTGTTCACCTCG 38289
|||| || || | |||| || || || |||||||| |||| ||| || ||||| || |||
Sbjct 239 CAAAACCAAAGGTTACA-AACGGCGTCTGACCGTTGGCGGTGTGCAGGGTGTTTACTTCG 181
Query 38290 TATTCGAGTCCCTGCATTGCATCATA-CACAGCTTTGTGAGTCTTTGCAATAGCGTATTC 38348
|| || || ||| | ||||| || ||| |||| || | ||||||| |
Sbjct 180 TACTCCAGCGACTGGAAGGCATCGTAGCAC-TCTTTAATGGTACGAGAGTTAGCGTAGCC 122
Query 38349 TTTCGCATCTGGAATTTTCCAAT----AACGGGCTT-CGTCCAAATGCTTTTCATGAGTC 38403
|| || || || || ||||| | ||| ||| || ||| || | | |
Sbjct 121 TTCGGCGTCCGGGATGTTCCACTCTTCTGCGGTCTTGCG-----ATGTTTGTTGTAGCTG 67
Query 38404 ATCTTAACATACGGTGCCAGCACTTCGTCAATACGATTAATTGTGTTGCCGCCGTAAATG 38463
| ||| |||||||||||||||| || ||||| ||||| ||| ||||||| |||||
Sbjct 66 GCGGTGACAAACGGTGCCAGCACTTCATCGATACGGTTAATGGTGGTGCCGCCATAAATA 7
Query 38464 TGACT 38468
|| ||
Sbjct 6 TGGCT 2
Score = 154 bits (170), Expect = 2e-32
Identities = 272/394 (69%), Gaps = 2/394 (1%)
Strand=Plus/Minus
Query 37018 ACTTCATCCTGCTTGCCGCGATTAAATGCGCGAGAACCAGGCGCACCGAGATAACCGCAT 37077
||||| |||||||| ||| ||||||| || | | | || ||| | ||| |||||
Sbjct 1449 ACTTCTTCCTGCTTACCGGCGTTAAATGGACGTGCATCCGGGCTACCTAAATATCCGCAC 1390
Query 37078 ACGCGACGAATAACGTTCATTTTGGTATCGTCATGATTACCACATTTAGGACATTCGTAC 37137
||||| ||| | || || || ||||||| ||||||||||| || || | |
Sbjct 1389 ACGCGGCGAGTCACCGACACACGGGAGGCGTCATGGTTACCACATTTCGGGCAAGTGAAG 1330
Query 37138 CCTTTGGAAGTAGCAGT-GAATTCACCGTGATAGCCACATTCAAAGCAAACATCAACAGG 37196
|||||| || ||| | ||| |||||| | ||||||| || |||| |||||| ||
Sbjct 1329 CCTTTGCTGGT-GCACTCGAACTCACCGGTAAAGCCACACTCGTAGCACTCATCAATCGG 1271
Query 37197 AGTATTTGTTCCGTAATACGGTGTGTTCAGATAAGCATAATCCCAAACGTCTTCCAACGC 37256
||||| || |||||||||||| | | |||| |||||||| || ||||||| |||
Sbjct 1270 TGTATTGGTGCCGTAATACGGTACATGCTGATAGCTGTAATCCCAGACATCTTCCAGCGC 1211
Query 37257 TTTCAGATTATTTTTCATATTCGGATATTCTCCGTATGAAATAAATCCACCTGAACTCAG 37316
||||| || | | || || ||||| || ||||| |||| || ||||| |||
Sbjct 1210 CTTCAGGTTGTGCTGAATGTTTGGATACTCGCCGTAGCAAATGAAACCACCGTTCGCCAG 1151
Query 37317 AGGAATAAATTGCTTTTCAAAATCAATCTTGTCATAAGGATTGGTATTATGACGGACGTC 37376
|| | || |||||| || |||||||| || || || || | || ||
Sbjct 1150 CGGCGGGTAAGGCGCTTCAAAGTCGATCTTGTCGTACGGGTTCACCTTCTTCTCCACATC 1091
Query 37377 GAGGTGGAAGCTGTTTGTGTAATAATCTTTATCG 37410
||||||||| ||||| ||||| ||| ||||||||
Sbjct 1090 GAGGTGGAAACTGTTGGTGTAGTAACCTTTATCG 1057
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 746182033829440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |