Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq223 122 2e-22
seq52 84.2 5e-11
>seq223
Length=82600
Score = 122 bits (134), Expect = 2e-22
Identities = 111/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|||||||| ||||| | |||||||||||| || || |||||||| || || || || |
Sbjct 42634 CCAGCAAAGATTAGTCGCTGTTGATCAGGCGGAATACCTTCTTTGTCTTGTATTTTAGTC 42693
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
||||||||||| | ||||| |||||| || || || ||||| ||||| ||||| ||
Sbjct 42694 TTTACATTTTCAATAGTATCCGAAGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTTAGA 42753
Query 104540 GTTTTTACAAATATCTGCAT 104559
||||| || |||||||||||
Sbjct 42754 GTTTTCACGAATATCTGCAT 42773
Score = 114 bits (126), Expect = 3e-20
Identities = 113/146 (77%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 104415 GTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCT 104474
|||| || |||||||||| | ||| ||||| || || || || ||||| || || ||||
Sbjct 41493 GTTTACCTGCAAAAATTAATCGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATCT 41552
Query 104475 TTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAG 104534
| || || |||||||||| |||||| ||| || || || | ||||||||||| || |
Sbjct 41553 TCGCCTTGACATTTTCTATGGTATCCGAAGGCTCCACTTCCAAAGTAATAGTCTTCCCTG 41612
Query 104535 TAAGTGTTTTTACAAATATCTGCATT 104560
| || ||||| || ||||||||||||
Sbjct 41613 TCAGCGTTTTCACGAATATCTGCATT 41638
Score = 109 bits (120), Expect = 1e-18
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| || ||||| ||||| | ||| ||||| ||||| |||||||| ||||| ||||| ||
Sbjct 43197 TTACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATTCCTTCCTTATCTTGAATTTTC 43256
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
| || || || || | ||||||| || || || || || |||||||| || || ||
Sbjct 43257 GTCTTCACGTTATCAATGGTATCGGACGGCTCAACTTCCAGCGTAATAGTTTTGCCGGTT 43316
Query 104537 AGTGTTTTTACAAATATCTGCAT 104559
|| ||||| ||||||||||||||
Sbjct 43317 AGCGTTTTCACAAATATCTGCAT 43339
Score = 105 bits (116), Expect = 2e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|| |||||||| || | ||| ||||||||||| ||||||||||| ||||| ||||| ||
Sbjct 41216 CCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGTATCTTGGCC 41275
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| || || || | || || ||| || || || || || ||||| || || || | |
Sbjct 41276 TTCACGTTATCGATAGTGTCCGAAGGCTCCACTTCGAGAGTTATAGTTTTGCCTGTCAAT 41335
Query 104540 GTTTTTACAAATATCTGCATT 104560
||||| |||||||| ||||||
Sbjct 41336 GTTTTGACAAATATTTGCATT 41356
Score = 100 bits (110), Expect = 7e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||||| | ||| |||||||| || || |||||||| || || || |||| |
Sbjct 42352 CCAGCAAAAATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGTATTTTTGTT 42411
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| || ||||| | ||| || || || || || || || || || || ||||||||
Sbjct 42412 TTAACGTTTTCAATGGTGTCTGACGGCTCCACTTCGAGGGTGATTGTTTTTCCAGTAAGC 42471
Query 104540 GTTTTTACAAATATCTGCAT 104559
||||| || ||||| |||||
Sbjct 42472 GTTTTAACGAATATTTGCAT 42491
Score = 93.3 bits (102), Expect = 1e-13
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||||| | ||||||||||| || || ||||| ||||||||||| || |||
Sbjct 42068 CCAGCAAAAATTAAACGTTGTTGATCAGGTGGAATACCTTCCTTATCCTGAATTTTGGCT 42127
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| || ||||| | || || || || || || || || || || || || || |
Sbjct 42128 TTCACGTTTTCAATAGTGTCCGACGGCTCCACTTCCAGCGTTATTGTTTTTCCGGTTAAA 42187
Query 104540 GTTTTTACAAATATCTGCATT 104560
||||| ||||| || ||||||
Sbjct 42188 GTTTTCACAAAAATTTGCATT 42208
>seq52
Length=191592
Score = 84.2 bits (92), Expect = 5e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429
||||||| || || |||||||||||||| || || ||||| | || || ||||||||||
Sbjct 143425 CTTTCTGGATGTTGTAGTCAGATAGAGTCCTTCCATCTTCCAACTGCTTACCAGCAAAAA 143484
Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCT 104458
| || | |||||| |||||||| || |||
Sbjct 143485 TCAGTCGCTGTTGTTCAGGAGGAATGCCT 143513
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151337089474448
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |