Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_005336.1
Length=139962
Score E
Sequences producing significant alignments: (Bits) Value
seq52 120 3e-22
>seq52
Length=191592
Score = 120 bits (132), Expect = 3e-22
Identities = 132/176 (75%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 5321 TCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAG 5380
||||| || || |||||||| | || ||| ||| || || | | ||||| ||
Sbjct 29444 TCGCAGATAAGTTGAGCTATGCGATCGCCCCTCTGTACGCGGAACTTGTCTTTTCCAAAA 29385
Query 5381 TTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACG 5440
|| |||| || || || |||||||||| ||||||||||||||| |||||||| |||||
Sbjct 29384 TTGAACAATACTACTCCAACATTGCCTCTGTAGTCTTCGTCGATCACGCCAGCTCCCACA 29325
Query 5441 TCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAACC 5496
||||| || || || ||||| || ||||| ||||| || || |||||||||||
Sbjct 29324 TCGATGCTATGCTTAACTGCAAGACCCGAACGGGGTGCAATACGCCCGTAGCAACC 29269
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447727139366720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |