Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq52 120 3e-22 >seq52 Length=191592 Score = 120 bits (132), Expect = 3e-22 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 5321 TCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAG 5380 ||||| || || |||||||| | || ||| ||| || || | | ||||| || Sbjct 29444 TCGCAGATAAGTTGAGCTATGCGATCGCCCCTCTGTACGCGGAACTTGTCTTTTCCAAAA 29385 Query 5381 TTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACG 5440 || |||| || || || |||||||||| ||||||||||||||| |||||||| ||||| Sbjct 29384 TTGAACAATACTACTCCAACATTGCCTCTGTAGTCTTCGTCGATCACGCCAGCTCCCACA 29325 Query 5441 TCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAACC 5496 ||||| || || || ||||| || ||||| ||||| || || ||||||||||| Sbjct 29324 TCGATGCTATGCTTAACTGCAAGACCCGAACGGGGTGCAATACGCCCGTAGCAACC 29269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447727139366720