Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq1947 603 2e-168 >seq1947 Length=4488 Score = 603 bits (668), Expect = 2e-168 Identities = 336/337 (99%), Gaps = 0/337 (0%) Strand=Plus/Plus Query 32879 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTCCAGTATCGATTTTCCGAT 32938 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3637 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTCCAGTATCGATTTTCCGAT 3696 Query 32939 TCGTTTGGGGGTAACCCACCGTTATATTCGTGCGGTCTTAGTGCACTGTAATATCCAACG 32998 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 3697 TCGTTTGGGGGTAACCCACCGTTATATTCGTGCGGTCTTAGTGCGCTGTAATATCCAACG 3756 Query 32999 ATATAGTCCGTTATGGCGTGAGCTGCCTCGCTGAAGCTTACGTAACCCACCACCGGCATC 33058 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3757 ATATAGTCCGTTATGGCGTGAGCTGCCTCGCTGAAGCTTACGTAACCCACCACCGGCATC 3816 Query 33059 CATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAGTTTCCG 33118 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3817 CATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAGTTTCCG 3876 Query 33119 CGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCGGAACTGCCTGCTC 33178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3877 CGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCGGAACTGCCTGCTC 3936 Query 33179 GTATAATGACTGCCCTGATCGCTGTGGAACATCACCC 33215 ||||||||||||||||||||||||||||||||||||| Sbjct 3937 GTATAATGACTGCCCTGATCGCTGTGGAACATCACCC 3973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124809840018360