Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_005856.1
Length=94800
Score E
Sequences producing significant alignments: (Bits) Value
seq1011 1692 0.0
seq1317 899 0.0
seq2540 767 0.0
seq1560 471 3e-128
seq1066 95.1 7e-15
seq1103 87.8 1e-12
>seq1011
Length=14871
Score = 1692 bits (1876), Expect = 0.0
Identities = 1103/1206 (91%), Gaps = 5/1206 (0%)
Strand=Plus/Minus
Query 7649 TAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCG-GCTGACTCAGTCATTTCATTTCT 7707
|||||||||||||||||||| || | |||||| | |||||||| | ||| | ||
Sbjct 10822 TAGGGAAGGTGCGAATAAGCAGGTCATTTCTTCCCAAGCTGACTCGCTGATTAAAATTTC 10763
Query 7708 TCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTT 7767
| | || ||||||||||| ||||| ||| | | |||||||||||||||| | |||
Sbjct 10762 GCGGATCTGGGCCGATTTTTT-TCCCGCAAACACATCGAATCAGCCTATTTAGGCTATTT 10704
Query 7768 CTTCG-CCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCA 7826
||| |||||| |||||||| || ||||||| ||||||||||||||||| |||||||
Sbjct 10703 TTTCCACCATTTCTGGCGTTATTTCCGGTTTTTACTGAGATCTCTCCCACTGGCGTATCA 10644
Query 7827 TTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTT 7886
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 10643 TTTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCGTTTT 10584
Query 7887 TCAGCAACCCCTTGTATCTGGCTTTCACGAAGCCGAACTGTCGCTTGATGATGCGAAATG 7946
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 10583 TCAGCAGCCCCTTGTATCTGGCTTTCACGAAGCCGAACTGCCGCTTGATGATGCGAAACG 10524
Query 7947 GGTGCTCCACCCTGGCCCGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGT 8006
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 10523 GGTGCTCCACCCTGGCACGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGT 10464
Query 8007 TCTTGCGTGGATGCTGTTTCAAGGTTCTTACCTTGCCGGGGCGCTCGGCGATCAGCCAGT 8066
||||||| |||||||| ||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 10463 TCTTGCGCGGATGCTGCTTCAAGGTTTTTACCTTGCCGGGACGCTCGGCGATCAGCCAGT 10404
Query 8067 CCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTG 8126
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 10403 CCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTG 10344
Query 8127 AGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGG 8186
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 10343 AGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGG 10284
Query 8187 CCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCT 8246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10283 CCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCT 10224
Query 8247 TCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCT 8306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10223 TCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCT 10164
Query 8307 GCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATGATGGTGGCATCGACCAAGGTGCCTT 8366
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 10163 GCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTT 10104
Query 8367 GAGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGG 8426
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 10103 GGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGG 10044
Query 8427 CCAGTTGATGCTGCTCCAGCAGGTGGCGGAAATTCATGATGGTGGTGCGGTCCGGCAAGG 8486
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 10043 CCAGTTGATGCTGCTCGAGCAGGTGGCGGAAATTCATGATGGTGGTGCGATCCGGCAGGG 9984
Query 8487 CGCTATCCAGGGATAACCGGGCAAACAGACGCATGGAGGCGATTTCGTACAGAGCATCTT 8546
|||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 9983 CGCTATCCAGGGATAATCGGGCAAACAGGCGCATGGAGGCGATTTCGTACAGGGCATCTT 9924
Query 8547 CCATCGCGCCATCGCTCAGGTTGTACCAATGCTGCATGCAGTGAATGCGTAGCATGGTTT 8606
|||| || || ||||||||||||||||||||||||||||||||||| || |||||||| |
Sbjct 9923 CCATGGCACCGTCGCTCAGGTTGTACCAATGCTGCATGCAGTGAATACGCAGCATGGTCT 9864
Query 8607 CCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCA 8666
|||||||||| || || |||||||| || |||||||| ||||||||||||||||| |
Sbjct 9863 CCAGCGGATAGGGCCGTCGGCCATTGCCCGCCTTGGGATAAAACGGCTCGATGACAGCGG 9804
Query 8667 CCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCT 8726
||| || ||||||||||||||||||||||||||||| | |||||||||||||| |||||
Sbjct 9803 TCATATTCTGCCATGGCAGAATCTGCTCCATGCGGGAGAGGAAAATCTCTTTTCGGGTCT 9744
Query 8727 GACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACC 8786
||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||| ||
Sbjct 9743 GACGGCGCTTAGTGCTGAATTCACTATCGGCGAAGGTGAGTTGATGGCTCATGATG-TCC 9685
Query 8787 CTGTTCTATG-GCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTC 8845
|| | ||| ||||| ||||| | |||||||||||||||| ||||||||||||||||
Sbjct 9684 CTCTGGGATGCGCTCCGGATGAATATGATGATCTCATATCAGGAACTTGTTCGCACCTTC 9625
Query 8846 CTTAGC 8851
| ||||
Sbjct 9624 CCTAGC 9619
>seq1317
Length=9928
Score = 899 bits (996), Expect = 0.0
Identities = 548/581 (94%), Gaps = 0/581 (0%)
Strand=Plus/Minus
Query 22622 TCTGGGTAATGACTCAAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTT 22681
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 TCTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTT 522
Query 22682 TGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGT 22741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 TGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGT 462
Query 22742 GCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGT 22801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 GCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGT 402
Query 22802 GCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCA 22861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 GCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCA 342
Query 22862 CGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATCGTGCGTTCACCGA 22921
|||||||||||||||||||||||||||||||| |||| || |||| |||||||||||||
Sbjct 341 CGTCAAAGGGTGACAGCAGGCTCATAAGACGCTCCAGTGTGGCCAGAGTGCGTTCACCGA 282
Query 22922 ATACGTGCGCAACAACCGTCTTCCGGAGCCTGTCATACGCGTAAAACAGCCAGCGCTGGC 22981
| |||||||| ||||||||| |||| | |||||||||||||||||||||||||||||| |
Sbjct 281 AGACGTGCGCCACAACCGTCCTCCGTATCCTGTCATACGCGTAAAACAGCCAGCGCTGAC 222
Query 22982 GCGATTTAGCCCCGACGTATCCCCACTGTTCGTCCATTTCCGCGCAGACGATGACGTCAC 23041
| |||||||| |||||||| |||||||||||||||||||| |||||||| || || ||||
Sbjct 221 GTGATTTAGCACCGACGTAGCCCCACTGTTCGTCCATTTCAGCGCAGACAATCACATCAC 162
Query 23042 TGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAAT 23101
||||||| |||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 161 TGCCCGGTTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAGTGACGTAAAAC 102
Query 23102 CGTGTTGAGGCCAACGCCCATAATGCGGGCGGTTGCCCGGCATCCAACGCCATTCATGGC 23161
||||||||||||||||||||||||||| || | || || ||||| ||||||||||||||
Sbjct 101 CGTGTTGAGGCCAACGCCCATAATGCGTGCACTGGCGCGACATCCGACGCCATTCATGGC 42
Query 23162 CATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGG 23202
|||||||||||||||||||||||||||||| ||||| ||||
Sbjct 41 CATATCAATGATTTTCTGGTGCGTACCGGGCTGAGAGGCGG 1
>seq2540
Length=2625
Score = 767 bits (850), Expect = 0.0
Identities = 431/435 (99%), Gaps = 0/435 (0%)
Strand=Plus/Plus
Query 22626 GGTAATGACTCAAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTC 22685
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2191 GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTC 2250
Query 22686 ATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTG 22745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2251 ATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTG 2310
Query 22746 CCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAG 22805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2311 CCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAG 2370
Query 22806 CTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTC 22865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2371 CTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTC 2430
Query 22866 AAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATCGTGCGTTCACCGAATAC 22925
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2431 AAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATAC 2490
Query 22926 GTGCGCAACAACCGTCTTCCGGAGCCTGTCATACGCGTAAAACAGCCAGCGCTGGCGCGA 22985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2491 GTGCGCAACAACCGTCTTCCGGAGCCTGTCATACGCGTAAAACAGCCAGCGCTGGCGCGA 2550
Query 22986 TTTAGCCCCGACGTATCCCCACTGTTCGTCCATTTCCGCGCAGACGATGACGTCACTGCC 23045
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2551 TTTAGCCCCGACATAGCCCCACTGTTCGTCCATTTCCGCGCAGACGATGACGTCACTGCC 2610
Query 23046 CGGCTGTATGCGCGA 23060
|||||||||||||||
Sbjct 2611 CGGCTGTATGCGCGA 2625
>seq1560
Length=7175
Score = 471 bits (522), Expect = 3e-128
Identities = 263/264 (99%), Gaps = 0/264 (0%)
Strand=Plus/Plus
Query 23133 GTTGCCCGGCATCCAACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGT 23192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 GTTGCCCGGCATCCAACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGT 62
Query 23193 TGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAG 23252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 TGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAG 122
Query 23253 CGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAG 23312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 CGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAG 182
Query 23313 GGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAAT 23372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 GGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAAT 242
Query 23373 CAGTAAGTTGGCAGCATCACCTGC 23396
||||||||||||||||||||| ||
Sbjct 243 CAGTAAGTTGGCAGCATCACCGGC 266
>seq1066
Length=13853
Score = 95.1 bits (104), Expect = 7e-15
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 70932 CGGCCCTTTAGCTCAGTGGTTAGAGCTGGCGACTCATAATCGCACGGTCACCGGTTCAAG 70991
|||||||||||||||||||| ||||| ||||||||||||||| |||| | ||||||||
Sbjct 260 CGGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAG 201
Query 70992 TCCGGTAGGGGCCACCA 71008
||| | | |||||||||
Sbjct 200 TCCAGCAAGGGCCACCA 184
>seq1103
Length=13301
Score = 87.8 bits (96), Expect = 1e-12
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 34441 TCGTCTGTTGCCATATTCAGCCTGACAGCGCGTTCCAGCGGCTGGATGACTGATTCAGCT 34500
|| || ||| || | |||||||||||||| || || ||||| ||||||| || || |||
Sbjct 2752 TCATCCGTTTCCCTGTTCAGCCTGACAGCACGCCCCGGCGGCCGGATGACAGACTCCGCT 2811
Query 34501 TCGGAAAGCAATGCGGCCTTTTGTGATTCGGCTTGTTG 34538
|||| |||||| |||| ||| |||||||| || ||||
Sbjct 2812 TCGGTAAGCAAAGCGGTCTTCTGTGATTCCGCCAGTTG 2849
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 303219840758076
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