Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq1011 1692 0.0 seq1317 899 0.0 seq2540 767 0.0 seq1560 471 3e-128 seq1066 95.1 7e-15 seq1103 87.8 1e-12 >seq1011 Length=14871 Score = 1692 bits (1876), Expect = 0.0 Identities = 1103/1206 (91%), Gaps = 5/1206 (0%) Strand=Plus/Minus Query 7649 TAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCG-GCTGACTCAGTCATTTCATTTCT 7707 |||||||||||||||||||| || | |||||| | |||||||| | ||| | || Sbjct 10822 TAGGGAAGGTGCGAATAAGCAGGTCATTTCTTCCCAAGCTGACTCGCTGATTAAAATTTC 10763 Query 7708 TCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTT 7767 | | || ||||||||||| ||||| ||| | | |||||||||||||||| | ||| Sbjct 10762 GCGGATCTGGGCCGATTTTTT-TCCCGCAAACACATCGAATCAGCCTATTTAGGCTATTT 10704 Query 7768 CTTCG-CCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCA 7826 ||| |||||| |||||||| || ||||||| ||||||||||||||||| ||||||| Sbjct 10703 TTTCCACCATTTCTGGCGTTATTTCCGGTTTTTACTGAGATCTCTCCCACTGGCGTATCA 10644 Query 7827 TTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTT 7886 |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 10643 TTTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCGTTTT 10584 Query 7887 TCAGCAACCCCTTGTATCTGGCTTTCACGAAGCCGAACTGTCGCTTGATGATGCGAAATG 7946 |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 10583 TCAGCAGCCCCTTGTATCTGGCTTTCACGAAGCCGAACTGCCGCTTGATGATGCGAAACG 10524 Query 7947 GGTGCTCCACCCTGGCCCGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGT 8006 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 10523 GGTGCTCCACCCTGGCACGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGT 10464 Query 8007 TCTTGCGTGGATGCTGTTTCAAGGTTCTTACCTTGCCGGGGCGCTCGGCGATCAGCCAGT 8066 ||||||| |||||||| ||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 10463 TCTTGCGCGGATGCTGCTTCAAGGTTTTTACCTTGCCGGGACGCTCGGCGATCAGCCAGT 10404 Query 8067 CCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTG 8126 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 10403 CCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTG 10344 Query 8127 AGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGG 8186 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 10343 AGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGG 10284 Query 8187 CCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCT 8246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10283 CCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCT 10224 Query 8247 TCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCT 8306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10223 TCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCT 10164 Query 8307 GCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATGATGGTGGCATCGACCAAGGTGCCTT 8366 |||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 10163 GCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTT 10104 Query 8367 GAGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGG 8426 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 10103 GGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGG 10044 Query 8427 CCAGTTGATGCTGCTCCAGCAGGTGGCGGAAATTCATGATGGTGGTGCGGTCCGGCAAGG 8486 |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| || Sbjct 10043 CCAGTTGATGCTGCTCGAGCAGGTGGCGGAAATTCATGATGGTGGTGCGATCCGGCAGGG 9984 Query 8487 CGCTATCCAGGGATAACCGGGCAAACAGACGCATGGAGGCGATTTCGTACAGAGCATCTT 8546 |||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 9983 CGCTATCCAGGGATAATCGGGCAAACAGGCGCATGGAGGCGATTTCGTACAGGGCATCTT 9924 Query 8547 CCATCGCGCCATCGCTCAGGTTGTACCAATGCTGCATGCAGTGAATGCGTAGCATGGTTT 8606 |||| || || ||||||||||||||||||||||||||||||||||| || |||||||| | Sbjct 9923 CCATGGCACCGTCGCTCAGGTTGTACCAATGCTGCATGCAGTGAATACGCAGCATGGTCT 9864 Query 8607 CCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCA 8666 |||||||||| || || |||||||| || |||||||| ||||||||||||||||| | Sbjct 9863 CCAGCGGATAGGGCCGTCGGCCATTGCCCGCCTTGGGATAAAACGGCTCGATGACAGCGG 9804 Query 8667 CCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCT 8726 ||| || ||||||||||||||||||||||||||||| | |||||||||||||| ||||| Sbjct 9803 TCATATTCTGCCATGGCAGAATCTGCTCCATGCGGGAGAGGAAAATCTCTTTTCGGGTCT 9744 Query 8727 GACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACC 8786 ||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||| || Sbjct 9743 GACGGCGCTTAGTGCTGAATTCACTATCGGCGAAGGTGAGTTGATGGCTCATGATG-TCC 9685 Query 8787 CTGTTCTATG-GCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTC 8845 || | ||| ||||| ||||| | |||||||||||||||| |||||||||||||||| Sbjct 9684 CTCTGGGATGCGCTCCGGATGAATATGATGATCTCATATCAGGAACTTGTTCGCACCTTC 9625 Query 8846 CTTAGC 8851 | |||| Sbjct 9624 CCTAGC 9619 >seq1317 Length=9928 Score = 899 bits (996), Expect = 0.0 Identities = 548/581 (94%), Gaps = 0/581 (0%) Strand=Plus/Minus Query 22622 TCTGGGTAATGACTCAAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTT 22681 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 581 TCTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTT 522 Query 22682 TGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGT 22741 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 521 TGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGT 462 Query 22742 GCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGT 22801 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 461 GCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGT 402 Query 22802 GCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCA 22861 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 401 GCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCA 342 Query 22862 CGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATCGTGCGTTCACCGA 22921 |||||||||||||||||||||||||||||||| |||| || |||| ||||||||||||| Sbjct 341 CGTCAAAGGGTGACAGCAGGCTCATAAGACGCTCCAGTGTGGCCAGAGTGCGTTCACCGA 282 Query 22922 ATACGTGCGCAACAACCGTCTTCCGGAGCCTGTCATACGCGTAAAACAGCCAGCGCTGGC 22981 | |||||||| ||||||||| |||| | |||||||||||||||||||||||||||||| | Sbjct 281 AGACGTGCGCCACAACCGTCCTCCGTATCCTGTCATACGCGTAAAACAGCCAGCGCTGAC 222 Query 22982 GCGATTTAGCCCCGACGTATCCCCACTGTTCGTCCATTTCCGCGCAGACGATGACGTCAC 23041 | |||||||| |||||||| |||||||||||||||||||| |||||||| || || |||| Sbjct 221 GTGATTTAGCACCGACGTAGCCCCACTGTTCGTCCATTTCAGCGCAGACAATCACATCAC 162 Query 23042 TGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAAT 23101 ||||||| |||||||||||||||||||||||||||||||||||||||| || || |||| Sbjct 161 TGCCCGGTTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAGTGACGTAAAAC 102 Query 23102 CGTGTTGAGGCCAACGCCCATAATGCGGGCGGTTGCCCGGCATCCAACGCCATTCATGGC 23161 ||||||||||||||||||||||||||| || | || || ||||| |||||||||||||| Sbjct 101 CGTGTTGAGGCCAACGCCCATAATGCGTGCACTGGCGCGACATCCGACGCCATTCATGGC 42 Query 23162 CATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGG 23202 |||||||||||||||||||||||||||||| ||||| |||| Sbjct 41 CATATCAATGATTTTCTGGTGCGTACCGGGCTGAGAGGCGG 1 >seq2540 Length=2625 Score = 767 bits (850), Expect = 0.0 Identities = 431/435 (99%), Gaps = 0/435 (0%) Strand=Plus/Plus Query 22626 GGTAATGACTCAAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTC 22685 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2191 GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTC 2250 Query 22686 ATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTG 22745 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2251 ATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTG 2310 Query 22746 CCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAG 22805 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2311 CCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAG 2370 Query 22806 CTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTC 22865 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2371 CTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTC 2430 Query 22866 AAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATCGTGCGTTCACCGAATAC 22925 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2431 AAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATAC 2490 Query 22926 GTGCGCAACAACCGTCTTCCGGAGCCTGTCATACGCGTAAAACAGCCAGCGCTGGCGCGA 22985 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2491 GTGCGCAACAACCGTCTTCCGGAGCCTGTCATACGCGTAAAACAGCCAGCGCTGGCGCGA 2550 Query 22986 TTTAGCCCCGACGTATCCCCACTGTTCGTCCATTTCCGCGCAGACGATGACGTCACTGCC 23045 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2551 TTTAGCCCCGACATAGCCCCACTGTTCGTCCATTTCCGCGCAGACGATGACGTCACTGCC 2610 Query 23046 CGGCTGTATGCGCGA 23060 ||||||||||||||| Sbjct 2611 CGGCTGTATGCGCGA 2625 >seq1560 Length=7175 Score = 471 bits (522), Expect = 3e-128 Identities = 263/264 (99%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 23133 GTTGCCCGGCATCCAACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGT 23192 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3 GTTGCCCGGCATCCAACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGT 62 Query 23193 TGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAG 23252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 63 TGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAG 122 Query 23253 CGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAG 23312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 123 CGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAG 182 Query 23313 GGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAAT 23372 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 183 GGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAAT 242 Query 23373 CAGTAAGTTGGCAGCATCACCTGC 23396 ||||||||||||||||||||| || Sbjct 243 CAGTAAGTTGGCAGCATCACCGGC 266 >seq1066 Length=13853 Score = 95.1 bits (104), Expect = 7e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 70932 CGGCCCTTTAGCTCAGTGGTTAGAGCTGGCGACTCATAATCGCACGGTCACCGGTTCAAG 70991 |||||||||||||||||||| ||||| ||||||||||||||| |||| | |||||||| Sbjct 260 CGGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAG 201 Query 70992 TCCGGTAGGGGCCACCA 71008 ||| | | ||||||||| Sbjct 200 TCCAGCAAGGGCCACCA 184 >seq1103 Length=13301 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 34441 TCGTCTGTTGCCATATTCAGCCTGACAGCGCGTTCCAGCGGCTGGATGACTGATTCAGCT 34500 || || ||| || | |||||||||||||| || || ||||| ||||||| || || ||| Sbjct 2752 TCATCCGTTTCCCTGTTCAGCCTGACAGCACGCCCCGGCGGCCGGATGACAGACTCCGCT 2811 Query 34501 TCGGAAAGCAATGCGGCCTTTTGTGATTCGGCTTGTTG 34538 |||| |||||| |||| ||| |||||||| || |||| Sbjct 2812 TCGGTAAGCAAAGCGGTCTTCTGTGATTCCGCCAGTTG 2849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303219840758076