Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_005857.1 Length=51601 Score E Sequences producing significant alignments: (Bits) Value seq1754 392 1e-104 seq1066 150 6e-32 >seq1754 Length=5669 Score = 392 bits (434), Expect = 1e-104 Identities = 465/626 (74%), Gaps = 3/626 (0%) Strand=Plus/Plus Query 44157 AGCCTGAATATTTATGCTTGCGCCGCACGCCTGCGCGTATTTGTTTAGCGTCTTCATGCT 44216 ||| ||||||| ||| ||||||| || || || || ||||| | | || |||||||| Sbjct 1693 AGCGTGAATATCGATGGTTGCGCCACAGGCATGAGCATATTTTGTCAAAGTTTTCATGCT 1752 Query 44217 GGCACCCAGCGGGTTGCCTTCCAGGCGGCTAATTGCGGAC-GGTGTAATCCCCATACGTT 44275 ||| || | ||||| | ||||||||| || || || ||| || |||| |||||| |||| Sbjct 1753 GGCCCCTAAAGGGTTACTTTCCAGGCGACTGATGGCTGACGGGCGTAA-CCCCATTCGTT 1811 Query 44276 CAGCCAGGGCCGATTTACTCAAACCGGCCTTCTCTCTCATCTCATACAGCATTTCGACCA 44335 | ||||| || || || | || || || || |||||||| || || | |||||| |||| Sbjct 1812 CGGCCAGTGCTGACTTTGTTAATCCCGCTTTTTCTCTCATTTCGTATAACATTTCCACCA 1871 Query 44336 GCGCCAGTTCTTTATCTGCTTCCTGATAACCCCGGATTGCCTCCGGGGTGTTGAGCAGAC 44395 | |||||||||| || || |||| ||| || || || || || || |||| || Sbjct 1872 TCTCCAGTTCTTTGTCAGCATCCTCATACCCTTTGACAGCTTCTGGAGTACTGAGTAGTT 1931 Query 44396 TTTCTTTAACCTGGTTAAATGGGATGCCTTTTACTTTCATTCACTCATCTCCTTCAGGCG 44455 ||| || |||||| | ||||| | |||||||||||||| ||||||||||||| || Sbjct 1932 TTTGCTTTACCTGGCTGAATGGAACACCTTTTACTTTCATCAGTTCATCTCCTTCAGACG 1991 Query 44456 CGTTCTTGCTATTTCTATGGCCCCTGGCGGGGTTTTCGGTGTCTTCTTAACAAATGCATG 44515 | | || || ||||| || || | || || || | || || || ||||||||||| Sbjct 1992 CATCCTGGCAATTTCAATAGCTTTCGTTGGTGTCTTTTGCGTTTTTTTCACAAATGCATG 2051 Query 44516 CAGTAGGTAAATTTCGTGGCCAACTGCGTAAGCGTATAACGTTCTTGCTATGTTCTTATC 44575 ||| || || ||||||| || ||| |||||||| | || ||||| || || ||||| Sbjct 2052 CAGCAGATAGATTTCGTTACCCGTTGCATAAGCGTACAGTGTCCTTGCGATATTTTTATC 2111 Query 44576 TCCAACCCGTAACTCAAACAGCCCACCGCCAATTACGCGGCTATGAGGCATTTTTAATTT 44635 || || | | ||||| ||||| ||||||||||| ||||| ||||||||||| | ||| Sbjct 2112 CCCGACTCTCAGTTCAAAAAGCCCTCCGCCAATTACACGGCTGTGAGGCATTTTCATTTT 2171 Query 44636 ATTCCCTTCACTTTCCAGCCTTTCAATCAACCTGGTCATCCGGCCTCGTAGCTCATCTGG 44695 || ||||| |||||||| |||||||| |||||||| || || || || | ||||| Sbjct 2172 GTTACCTTCCTGTTCCAGCCGTTCAATCAGTCTGGTCATACGACCACGCAGATTGTCTGG 2231 Query 44696 TAATTCCTGAAGCTCATCCAGTGCCGCCGGGTGGGTTATTACGTTAAACATAGCATATCC 44755 |||||| |||| ||||||||||| |||||||| || || || ||||||||| ||| || Sbjct 2232 TAATTCTAGAAGTTCATCCAGTGCGGCCGGGTGAGTAATCACATTAAACATATTATAGCC 2291 Query 44756 TCCTAGCGTGTATAAATATACCAAAA 44781 ||| || || ||||| || |||| Sbjct 2292 TCC-AGAATGACAAAATACACTAAAA 2316 >seq1066 Length=13853 Score = 150 bits (166), Expect = 6e-32 Identities = 326/482 (68%), Gaps = 7/482 (1%) Strand=Plus/Minus Query 45584 AATCAAGGCCCATTGCTGATTGCGCAACAGCaaaaagagcctaacaaaaa-aggccgtta 45642 || || |||||| |||| | |||||| |||| | ||||||| || | | || ||| Sbjct 1422 AACCACGGCCCACTGCTT-TAGCGCAAAAGCAGAGTGAGCCTACCAGAGTTACGC--TTA 1366 Query 45643 aaaa-ctatggaaaacactgtaaaaataaacAGTGCTCAACTTGTGCATGCAGACTCGCT 45701 | | ||| |||| ||||||||||||||||||| | | | | | || || | || Sbjct 1365 CTGATCCATGAAAAATACTGTAAAAATAAACAGTGTTGATTTAATCAACGCTGATTGCCT 1306 Query 45702 GGAATTCATCAAAACCCTCCCGGATAACAGCATTGACGCCATCATTACCGACCCGCCGTA 45761 | | || || | |||| || ||| | ||||||| || |||| || |||||||| Sbjct 1305 GCATTTTATTCAGTCCCTGCCTGATGATTCCATTGACCTGATTGTTACAGATCCGCCGTA 1246 Query 45762 TTACCGCGTAAAGGCCAATGCCTGGGATAATCAATGGCCCTCCGTGACTGATTATCTGGC 45821 | | || || |||| | |||||| ||||| ||| | ||||| || Sbjct 1245 CTTCAAGGTGAAACCCAACGACTGGGACAATCAGTGGAAAGAGGACGAAGATTACCTTAA 1186 Query 45822 CTGGCTGGATGAGTTTTTTGCCGAATTCTGGCGGGTGCTGAAGCCCGCCGGTTCTCTTTA 45881 |||||||| | | | | ||| | |||||||||||| |||| || |||| |||||| Sbjct 1185 GTGGCTGGACCACTGTCTGGCCCAGTTCTGGCGGGTGTTGAAACCTTCCGGAAGTCTTTA 1126 Query 45882 CGTGTTTTGCGGACCAAAGTTGTCATCGGATACCGAGCTGCTTCTACGTGATCGTTTTAA 45941 | |||| || || | || |||| |||| ||| | | | ||||| || ||||| Sbjct 1125 CCTGTTCTGTGGTCATCGCCTGGCATCTGATATCGAAATCATGATGCGTGAACGCTTTAA 1066 Query 45942 TGTACTGAACCACATCATCTGGGCGAAACCCAGTGGACGATGGAACGGGGCCAGAAAAGA 46001 ||| ||||||||||| ||||||||||| || || || ||||||||| || || || Sbjct 1065 TGTGCTGAACCACATTATCTGGGCGAAGCCGTCCGGGCGCTGGAACGGGTGCAACAAGGA 1006 Query 46002 AGGTTTCCGCGCATACTTCCCGGCCAGTGAACATATTCTTTTTGCCGAGCATTAT--GGG 46059 | | | || || || ||||| |||| || | ||||| || || || |||||| ||| Sbjct 1005 AAGCCTGCGGGCGTATTTCCCCGCCACAGAGCGCATTCTGTTCGCGGAACATTATCAGGG 946 Query 46060 GC 46061 || Sbjct 945 GC 944 Score = 91.5 bits (100), Expect = 5e-14 Identities = 128/178 (72%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 46489 CCAGTTCAATATTATCCGGGCAAACACCCTTGCGAAAAACCACTGCAGAT--GATGCTCG 46546 || || || ||||||||||||||||| || || |||||||| |||||| | ||| Sbjct 536 CCTGTGCAGTATTATCCGGGCAAACATCCCTGTGAAAAACCG--GCAGATATGTTGCGGC 479 Query 46547 ACATCATTTCAGCCAGTACGCGTCCTGGCGATGTTGTTGCTGATTTCTTCATGGGATCGG 46606 | || ||| | ||||| | ||||| || || | ||||| |||||||||||||| || | Sbjct 478 AAATGATTACTGCCAGCAGTCGTCCGGGTGACCTGGTTGCAGATTTCTTCATGGGGTCCG 419 Query 46607 GGGCCACGATTAAGGCCGCCCTGCAGTTAGGGCGTGAAGCCATCGGTGTAGAGCTGGA 46664 | | || | || || || || | | |||||| || || ||||| |||||||| Sbjct 418 GTTCGACAGTCAAAGCAGCGATGGCGCTGGGGCGTCGTGCAATTGGTGTCGAGCTGGA 361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164993456758536