Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_005857.1
Length=51601
Score E
Sequences producing significant alignments: (Bits) Value
seq1754 392 1e-104
seq1066 150 6e-32
>seq1754
Length=5669
Score = 392 bits (434), Expect = 1e-104
Identities = 465/626 (74%), Gaps = 3/626 (0%)
Strand=Plus/Plus
Query 44157 AGCCTGAATATTTATGCTTGCGCCGCACGCCTGCGCGTATTTGTTTAGCGTCTTCATGCT 44216
||| ||||||| ||| ||||||| || || || || ||||| | | || ||||||||
Sbjct 1693 AGCGTGAATATCGATGGTTGCGCCACAGGCATGAGCATATTTTGTCAAAGTTTTCATGCT 1752
Query 44217 GGCACCCAGCGGGTTGCCTTCCAGGCGGCTAATTGCGGAC-GGTGTAATCCCCATACGTT 44275
||| || | ||||| | ||||||||| || || || ||| || |||| |||||| ||||
Sbjct 1753 GGCCCCTAAAGGGTTACTTTCCAGGCGACTGATGGCTGACGGGCGTAA-CCCCATTCGTT 1811
Query 44276 CAGCCAGGGCCGATTTACTCAAACCGGCCTTCTCTCTCATCTCATACAGCATTTCGACCA 44335
| ||||| || || || | || || || || |||||||| || || | |||||| ||||
Sbjct 1812 CGGCCAGTGCTGACTTTGTTAATCCCGCTTTTTCTCTCATTTCGTATAACATTTCCACCA 1871
Query 44336 GCGCCAGTTCTTTATCTGCTTCCTGATAACCCCGGATTGCCTCCGGGGTGTTGAGCAGAC 44395
| |||||||||| || || |||| ||| || || || || || || |||| ||
Sbjct 1872 TCTCCAGTTCTTTGTCAGCATCCTCATACCCTTTGACAGCTTCTGGAGTACTGAGTAGTT 1931
Query 44396 TTTCTTTAACCTGGTTAAATGGGATGCCTTTTACTTTCATTCACTCATCTCCTTCAGGCG 44455
||| || |||||| | ||||| | |||||||||||||| ||||||||||||| ||
Sbjct 1932 TTTGCTTTACCTGGCTGAATGGAACACCTTTTACTTTCATCAGTTCATCTCCTTCAGACG 1991
Query 44456 CGTTCTTGCTATTTCTATGGCCCCTGGCGGGGTTTTCGGTGTCTTCTTAACAAATGCATG 44515
| | || || ||||| || || | || || || | || || || |||||||||||
Sbjct 1992 CATCCTGGCAATTTCAATAGCTTTCGTTGGTGTCTTTTGCGTTTTTTTCACAAATGCATG 2051
Query 44516 CAGTAGGTAAATTTCGTGGCCAACTGCGTAAGCGTATAACGTTCTTGCTATGTTCTTATC 44575
||| || || ||||||| || ||| |||||||| | || ||||| || || |||||
Sbjct 2052 CAGCAGATAGATTTCGTTACCCGTTGCATAAGCGTACAGTGTCCTTGCGATATTTTTATC 2111
Query 44576 TCCAACCCGTAACTCAAACAGCCCACCGCCAATTACGCGGCTATGAGGCATTTTTAATTT 44635
|| || | | ||||| ||||| ||||||||||| ||||| ||||||||||| | |||
Sbjct 2112 CCCGACTCTCAGTTCAAAAAGCCCTCCGCCAATTACACGGCTGTGAGGCATTTTCATTTT 2171
Query 44636 ATTCCCTTCACTTTCCAGCCTTTCAATCAACCTGGTCATCCGGCCTCGTAGCTCATCTGG 44695
|| ||||| |||||||| |||||||| |||||||| || || || || | |||||
Sbjct 2172 GTTACCTTCCTGTTCCAGCCGTTCAATCAGTCTGGTCATACGACCACGCAGATTGTCTGG 2231
Query 44696 TAATTCCTGAAGCTCATCCAGTGCCGCCGGGTGGGTTATTACGTTAAACATAGCATATCC 44755
|||||| |||| ||||||||||| |||||||| || || || ||||||||| ||| ||
Sbjct 2232 TAATTCTAGAAGTTCATCCAGTGCGGCCGGGTGAGTAATCACATTAAACATATTATAGCC 2291
Query 44756 TCCTAGCGTGTATAAATATACCAAAA 44781
||| || || ||||| || ||||
Sbjct 2292 TCC-AGAATGACAAAATACACTAAAA 2316
>seq1066
Length=13853
Score = 150 bits (166), Expect = 6e-32
Identities = 326/482 (68%), Gaps = 7/482 (1%)
Strand=Plus/Minus
Query 45584 AATCAAGGCCCATTGCTGATTGCGCAACAGCaaaaagagcctaacaaaaa-aggccgtta 45642
|| || |||||| |||| | |||||| |||| | ||||||| || | | || |||
Sbjct 1422 AACCACGGCCCACTGCTT-TAGCGCAAAAGCAGAGTGAGCCTACCAGAGTTACGC--TTA 1366
Query 45643 aaaa-ctatggaaaacactgtaaaaataaacAGTGCTCAACTTGTGCATGCAGACTCGCT 45701
| | ||| |||| ||||||||||||||||||| | | | | | || || | ||
Sbjct 1365 CTGATCCATGAAAAATACTGTAAAAATAAACAGTGTTGATTTAATCAACGCTGATTGCCT 1306
Query 45702 GGAATTCATCAAAACCCTCCCGGATAACAGCATTGACGCCATCATTACCGACCCGCCGTA 45761
| | || || | |||| || ||| | ||||||| || |||| || ||||||||
Sbjct 1305 GCATTTTATTCAGTCCCTGCCTGATGATTCCATTGACCTGATTGTTACAGATCCGCCGTA 1246
Query 45762 TTACCGCGTAAAGGCCAATGCCTGGGATAATCAATGGCCCTCCGTGACTGATTATCTGGC 45821
| | || || |||| | |||||| ||||| ||| | ||||| ||
Sbjct 1245 CTTCAAGGTGAAACCCAACGACTGGGACAATCAGTGGAAAGAGGACGAAGATTACCTTAA 1186
Query 45822 CTGGCTGGATGAGTTTTTTGCCGAATTCTGGCGGGTGCTGAAGCCCGCCGGTTCTCTTTA 45881
|||||||| | | | | ||| | |||||||||||| |||| || |||| ||||||
Sbjct 1185 GTGGCTGGACCACTGTCTGGCCCAGTTCTGGCGGGTGTTGAAACCTTCCGGAAGTCTTTA 1126
Query 45882 CGTGTTTTGCGGACCAAAGTTGTCATCGGATACCGAGCTGCTTCTACGTGATCGTTTTAA 45941
| |||| || || | || |||| |||| ||| | | | ||||| || |||||
Sbjct 1125 CCTGTTCTGTGGTCATCGCCTGGCATCTGATATCGAAATCATGATGCGTGAACGCTTTAA 1066
Query 45942 TGTACTGAACCACATCATCTGGGCGAAACCCAGTGGACGATGGAACGGGGCCAGAAAAGA 46001
||| ||||||||||| ||||||||||| || || || ||||||||| || || ||
Sbjct 1065 TGTGCTGAACCACATTATCTGGGCGAAGCCGTCCGGGCGCTGGAACGGGTGCAACAAGGA 1006
Query 46002 AGGTTTCCGCGCATACTTCCCGGCCAGTGAACATATTCTTTTTGCCGAGCATTAT--GGG 46059
| | | || || || ||||| |||| || | ||||| || || || |||||| |||
Sbjct 1005 AAGCCTGCGGGCGTATTTCCCCGCCACAGAGCGCATTCTGTTCGCGGAACATTATCAGGG 946
Query 46060 GC 46061
||
Sbjct 945 GC 944
Score = 91.5 bits (100), Expect = 5e-14
Identities = 128/178 (72%), Gaps = 4/178 (2%)
Strand=Plus/Minus
Query 46489 CCAGTTCAATATTATCCGGGCAAACACCCTTGCGAAAAACCACTGCAGAT--GATGCTCG 46546
|| || || ||||||||||||||||| || || |||||||| |||||| | |||
Sbjct 536 CCTGTGCAGTATTATCCGGGCAAACATCCCTGTGAAAAACCG--GCAGATATGTTGCGGC 479
Query 46547 ACATCATTTCAGCCAGTACGCGTCCTGGCGATGTTGTTGCTGATTTCTTCATGGGATCGG 46606
| || ||| | ||||| | ||||| || || | ||||| |||||||||||||| || |
Sbjct 478 AAATGATTACTGCCAGCAGTCGTCCGGGTGACCTGGTTGCAGATTTCTTCATGGGGTCCG 419
Query 46607 GGGCCACGATTAAGGCCGCCCTGCAGTTAGGGCGTGAAGCCATCGGTGTAGAGCTGGA 46664
| | || | || || || || | | |||||| || || ||||| ||||||||
Sbjct 418 GTTCGACAGTCAAAGCAGCGATGGCGCTGGGGCGTCGTGCAATTGGTGTCGAGCTGGA 361
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 164993456758536
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |