Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq223 91.5 1e-13
>seq223
Length=82600
Score = 91.5 bits (100), Expect = 1e-13
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931
|||| ||||||| |||||||| || ||||| ||||||||||| | ||||||| || |
Sbjct 42356 CAAAAATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGTATTTTTGTTTTAA 42415
Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991
|| | | ||||| | | || || || | ||||| |||||||||||||| ||||
Sbjct 42416 CGTTTTCAATGGTGTCTGACGGCTCCACTTCGAGGGTGATTGTTTTTCCAGTAAGCGTTT 42475
Query 94992 TCACAAAGATCTGCATGC 95009
| || || || |||||||
Sbjct 42476 TAACGAATATTTGCATGC 42493
Score = 91.5 bits (100), Expect = 1e-13
Identities = 112/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916
||||| || ||| ||||||||| || |||||||||||||| || ||||| || || |
Sbjct 43189 CCAGCCACTTACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATTCCTTCCTTATCTT 43248
Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976
|||||| | ||| ||| | | || || | | || || || | ||| || ||||
Sbjct 43249 GAATTTTCGTCTTCACGTTATCAATGGTATCGGACGGCTCAACTTCCAGCGTAATAGTTT 43308
Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
| || || || ||||||||||| ||||||||||
Sbjct 43309 TGCCGGTTAGCGTTTTCACAAATATCTGCATGC 43341
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931
|||| ||||| | ||| ||||| || ||||||||||| || || | |||||| || || |
Sbjct 42072 CAAAAATTAAACGTTGTTGATCAGGTGGAATACCTTCCTTATCCTGAATTTTGGCTTTCA 42131
Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991
|| | | |||||| | | || || || | ||| || |||||||| || | |||||
Sbjct 42132 CGTTTTCAATAGTGTCCGACGGCTCCACTTCCAGCGTTATTGTTTTTCCGGTTAAAGTTT 42191
Query 94992 TCACAAAGATCTGCAT 95007
||||||| || |||||
Sbjct 42192 TCACAAAAATTTGCAT 42207
Score = 86.0 bits (94), Expect = 6e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927
||| | ||||| || | ||||||||| || || || ||||| ||||| | ||||||||||
Sbjct 43496 CCGGCGAAGATCAACCGTTGCTGATCCGGGGGGATGCCTTCCTTGTCCTGAATTTTTGCC 43555
Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987
|| ||| | || ||||| | | || || || | || || ||||| || || | |
Sbjct 43556 TTTACGTTCTCAACCGTGTCCGAAGGTTCCACTTCTAATGTTATTGTTTTGCCGGTTAAA 43615
Query 94988 GTTTTCACAAAGATCTGCATGC 95009
|| || ||||| ||||||||||
Sbjct 43616 GTCTTGACAAAAATCTGCATGC 43637
Score = 84.2 bits (92), Expect = 2e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931
||||||||| || || ||||| || ||||||||||||||||| | ||||| | ||| |
Sbjct 42638 CAAAGATTAGTCGCTGTTGATCAGGCGGAATACCTTCTTTGTCTTGTATTTTAGTCTTTA 42697
Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991
| | | ||| || | | || || || | ||| || || || ||||| |||||||
Sbjct 42698 CATTTTCAATAGTATCCGAAGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTTAGAGTTT 42757
Query 94992 TCACAAAGATCTGCAT 95007
|||| || ||||||||
Sbjct 42758 TCACGAATATCTGCAT 42773
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448267911272160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |