Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq223 91.5 1e-13 >seq223 Length=82600 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 |||| ||||||| |||||||| || ||||| ||||||||||| | ||||||| || | Sbjct 42356 CAAAAATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGTATTTTTGTTTTAA 42415 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 || | | ||||| | | || || || | ||||| |||||||||||||| |||| Sbjct 42416 CGTTTTCAATGGTGTCTGACGGCTCCACTTCGAGGGTGATTGTTTTTCCAGTAAGCGTTT 42475 Query 94992 TCACAAAGATCTGCATGC 95009 | || || || ||||||| Sbjct 42476 TAACGAATATTTGCATGC 42493 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||||| || ||| ||||||||| || |||||||||||||| || ||||| || || | Sbjct 43189 CCAGCCACTTACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATTCCTTCCTTATCTT 43248 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 |||||| | ||| ||| | | || || | | || || || | ||| || |||| Sbjct 43249 GAATTTTCGTCTTCACGTTATCAATGGTATCGGACGGCTCAACTTCCAGCGTAATAGTTT 43308 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || || ||||||||||| |||||||||| Sbjct 43309 TGCCGGTTAGCGTTTTCACAAATATCTGCATGC 43341 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 |||| ||||| | ||| ||||| || ||||||||||| || || | |||||| || || | Sbjct 42072 CAAAAATTAAACGTTGTTGATCAGGTGGAATACCTTCCTTATCCTGAATTTTGGCTTTCA 42131 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 || | | |||||| | | || || || | ||| || |||||||| || | ||||| Sbjct 42132 CGTTTTCAATAGTGTCCGACGGCTCCACTTCCAGCGTTATTGTTTTTCCGGTTAAAGTTT 42191 Query 94992 TCACAAAGATCTGCAT 95007 ||||||| || ||||| Sbjct 42192 TCACAAAAATTTGCAT 42207 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 ||| | ||||| || | ||||||||| || || || ||||| ||||| | |||||||||| Sbjct 43496 CCGGCGAAGATCAACCGTTGCTGATCCGGGGGGATGCCTTCCTTGTCCTGAATTTTTGCC 43555 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 || ||| | || ||||| | | || || || | || || ||||| || || | | Sbjct 43556 TTTACGTTCTCAACCGTGTCCGAAGGTTCCACTTCTAATGTTATTGTTTTGCCGGTTAAA 43615 Query 94988 GTTTTCACAAAGATCTGCATGC 95009 || || ||||| |||||||||| Sbjct 43616 GTCTTGACAAAAATCTGCATGC 43637 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||||| || || ||||| || ||||||||||||||||| | ||||| | ||| | Sbjct 42638 CAAAGATTAGTCGCTGTTGATCAGGCGGAATACCTTCTTTGTCTTGTATTTTAGTCTTTA 42697 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | | | ||| || | | || || || | ||| || || || ||||| ||||||| Sbjct 42698 CATTTTCAATAGTATCCGAAGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTTAGAGTTT 42757 Query 94992 TCACAAAGATCTGCAT 95007 |||| || |||||||| Sbjct 42758 TCACGAATATCTGCAT 42773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448267911272160