Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq911 147 3e-31 seq28 147 3e-31 seq217 136 6e-28 seq724 134 2e-27 >seq911 Length=17788 Score = 147 bits (162), Expect = 3e-31 Identities = 196/269 (73%), Gaps = 4/269 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | |||||| || || ||||||||||| || ||||| || ||| Sbjct 487 GCCAAGCGTCATCGCAAAGTTCTTCGCGACAATATCCAAGGAATAACGAAGCCTGCCATC 428 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||| || ||||| || ||| | | ||| | |||| || || | | Sbjct 427 CGTCGTCTAGCTCGGCGAGGTGGTGTAAAGAGAATAAGTGGTCTCATCTACGAGGAAACT 368 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATAC--CG 16610 || | || ||||| | ||| | ||| |||| ||| ||| || | || |||| || Sbjct 367 CGCGGAGTGCTGAAGGTTTTCTTGGAGAGCGTTGTCCGTGACGCAGT-GAC-ATACTGCG 310 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||| || ||| | || |||||||| | ||||| |||| || || || ||||| |||| Sbjct 309 AGCATGCCAAAAGAAAAACTGTCACTGCTATGGACGTCGTGTACGCCTTAAAACGACAAG 250 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | |||| || || ||||||||| | ||| Sbjct 249 GTCGTACAATCTACGGTTTTGGAGGCTAA 221 Score = 147 bits (162), Expect = 3e-31 Identities = 196/269 (73%), Gaps = 4/269 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | |||||| || || ||||||||||| || ||||| || ||| Sbjct 17561 GCCAAGCGTCATCGCAAAGTTCTTCGCGACAATATCCAAGGAATAACGAAGCCTGCCATC 17502 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||| || ||||| || ||| | | ||| | |||| || || | | Sbjct 17501 CGTCGTCTAGCTCGGCGAGGTGGTGTAAAGAGAATAAGTGGTCTCATCTACGAGGAAACT 17442 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATAC--CG 16610 || | || ||||| | ||| | ||| |||| ||| ||| || | || |||| || Sbjct 17441 CGCGGAGTGCTGAAGGTTTTCTTGGAGAGCGTTGTCCGTGACGCAGT-GAC-ATACTGCG 17384 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||| || ||| | || |||||||| | ||||| |||| || || || ||||| |||| Sbjct 17383 AGCATGCCAAAAGAAAAACTGTCACTGCTATGGACGTCGTGTACGCCTTAAAACGACAAG 17324 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | |||| || || ||||||||| | ||| Sbjct 17323 GTCGTACAATCTACGGTTTTGGAGGCTAA 17295 >seq28 Length=227696 Score = 147 bits (162), Expect = 3e-31 Identities = 196/269 (73%), Gaps = 4/269 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | |||||| || || ||||||||||| || ||||| || ||| Sbjct 3495 GCCAAGCGTCATCGCAAAGTTCTTCGCGACAATATCCAAGGAATAACGAAGCCTGCCATC 3554 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||| || ||||| || ||| | | ||| | |||| || || | | Sbjct 3555 CGTCGTCTAGCTCGGCGAGGTGGTGTAAAGAGAATAAGTGGTCTCATCTACGAGGAAACT 3614 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATAC--CG 16610 || | || ||||| | ||| | ||| |||| ||| ||| || | || |||| || Sbjct 3615 CGCGGAGTGCTGAAGGTTTTCTTGGAGAGCGTTGTCCGTGACGCAGT-GAC-ATACTGCG 3672 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||| || ||| | || |||||||| | ||||| |||| || || || ||||| |||| Sbjct 3673 AGCATGCCAAAAGAAAAACTGTCACTGCTATGGACGTCGTGTACGCCTTAAAACGACAAG 3732 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | |||| || || ||||||||| | ||| Sbjct 3733 GTCGTACAATCTACGGTTTTGGAGGCTAA 3761 >seq217 Length=84962 Score = 136 bits (150), Expect = 6e-28 Identities = 194/270 (72%), Gaps = 6/270 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | | | || || || |||||||| || || ||||| || || Sbjct 10325 GCGAAGCGTCATCGCAAAGTTTTGCGCGACAATATCCAAGGCATAACAAAGCCGGCCATT 10266 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||||| |||||||||||||| || ||| | |||| ||||||| | Sbjct 10265 CGTCGTCTAGCCCGTCGAGGTGGAGTCAAGCGCATCAGTGGCCTTATCTACGAAGAGACT 10206 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGC--TTTC-CACTATACC 16609 |||| || |||| | ||| | | | |||| ||| ||||| || | ||| | Sbjct 10205 CGTGGCGTGCTGAAAAGTTTCTTGGAAAGCGTTGTCCGGGATGCGGTTACGTACTGT--- 10149 Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669 |||||||| || || ||||| || || | ||||| | || || || ||||||||||| Sbjct 10148 GAGCACGCGAAGCGCAAGACCGTAACGGCAATGGACGTTGTGTACGCCCTGAAACGTCAA 10089 Query 16670 GGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || || | || || ||||| ||| | ||| Sbjct 10088 GGACGCACTATCTACGGTTTCGGAGGCTAA 10059 >seq724 Length=25305 Score = 134 bits (148), Expect = 2e-27 Identities = 190/267 (71%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||||||||||| | |||||| || ||||| |||||||| || ||||| || || Sbjct 15849 GCTAAGCGTCATCGCAAAGTTCTTCGTGACAACATTCAAGGAATAACAAAGCCCGCAATT 15908 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||||||||| || ||||| || || | | ||| | |||| || || | | Sbjct 15909 CGTCGTCTGGCTCGGCGAGGTGGCGTAAAAAGAATAAGTGGTCTCATCTACGAGGAAACT 15968 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | || ||||| | | | |||| ||| ||| ||| | ||| || Sbjct 15969 CGTGGAGTGCTAAAAGTCTTCTTGGAAAGCGTTGTCCGTGACGCTGTGACATATTGTGAA 16028 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || ||| | |||||||| || | ||||| | || || || |||||||| ||||| Sbjct 16029 CATGCCAAAAGGAAGACTGTTACAGCAATGGACGTAGTGTACGCCTTGAAACGACAAGGT 16088 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| || || ||||| ||| | ||| Sbjct 16089 CGTACAATCTACGGTTTCGGAGGCTAA 16115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071400140108