Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq18 192 7e-44 seq63 98.7 1e-15 >seq18 Length=263653 Score = 192 bits (212), Expect = 7e-44 Identities = 474/727 (65%), Gaps = 59/727 (8%) Strand=Plus/Minus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 ||||||||||| ||||| | |||| || ||||| || || ||||| | ||||| || Sbjct 150701 TTTTGGTATTCGCCCACCTTTCTTTCAAAGAAATTGGTCTTACCTTCAAGCGATATCATT 150642 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 ||||| || || |||||||| | |||| || || || | | |||| ||| | | Sbjct 150641 TCCATAAAGTCGAACGGATTCTCAGCATTGTATATCTTGTCGCAGTCCAACTCAACCAAC 150582 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 || | ||| || ||| ||||||| ||| ||||| | | |||||||| || || || Sbjct 150581 AAACGATCGGCCACGTATTCTATGTATTGGCACATCAGTACGCAATTCATGCCGATCAGG 150522 Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252 || || ||||| ||| | ||||| || ||||| ||||||| ||||| ||| ||| || Sbjct 150521 TTGACAGGAAGTGCCTCGGTAAGGAACTCTTGCTCAATGGCGACCGCCTCTCGTATGATC 150462 Query 33253 -GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 33311 | || | | | ||| ||| | || || || ||| | ||||||||| || Sbjct 150461 TGCTCGATGCGAT-CTTTACTGGTCTTGTGTTTCAAGTGAGAAAATAACAAACATGCAAA 150403 Query 33312 ATCGCAGTGCAGACCCT----------CGT---CTCTACTAATT---------------- 33342 ||| ||||||||||||| || || || |||| Sbjct 150402 ATCACAGTGCAGACCCTAAAATGAATGCGAAAACTTTAAAAATTGCACAGCCTAATGAGC 150343 Query 33343 ---------------------AGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGC 33381 || || ||| ||| ||||| || ||||| || ||||| Sbjct 150342 AGTACCTCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGCCCTGGCATGAGACCACGT 150283 Query 33382 TTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCA 33441 || || ||||| || || ||||| || |||||||||||| || || || || || ||| Sbjct 150282 TTCTTTAGCCAGAAAATCGAAGCAAAGCTTCCAGAAAAGAATATACCCTCGACGGCGGCA 150223 Query 33442 AAGGCAATAAGTCTCTCTCCATAACCGGCG-----CTGTCATGTATCCACTTTTGAGCCC 33496 || || | ||||| |||| | | || | |||| |||||| | |||||| Sbjct 150222 AATGCTACAAGTCGATCTC--TGAATGGTGACTTTTTGTCCGCTATCCATCGTAGAGCCC 150165 Query 33497 AATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttttt 33556 ||||||||||||| || || || || || || || ||||| || || || | || || Sbjct 150164 AATCGGCCTTCTTCTTAACGCATGGAATGGTCTCAATGGCGTTGAACAGGTGGTGGCGTT 150105 Query 33557 CATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTT 33616 | ||||| || ||| || || |||| ||||||||||| ||||| ||||| || | Sbjct 150104 CCGCTTCATCTTGAATATACGTGTCAATCAGCAGACTATACATCTCCGAGTGAATATTCT 150045 Query 33617 CAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAA 33676 | || || || || || ||||| || || | |||||| || | ||| | ||| | ||| Sbjct 150044 CTATAGCAATTTGGAAGCCGTAAAAGCAGCGAGCCTCTGTCACCTGAATTTCCCGAGAAA 149985 Query 33677 ATCGTTC 33683 | ||||| Sbjct 149984 AGCGTTC 149978 >seq63 Length=178715 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/225 (70%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 63456 ATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTT 63513 |||||||| || |||| |||||| | | |||| | || ||||| || || ||| Sbjct 170941 ATATAGCTCCCGGTGGCTCGAATAGAATGGACGTTGA--GCCCAATTCCTCCGGCATTTT 170884 Query 63514 TAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCA 63573 | || || | |||||| ||| | ||| || ||||| ||||| ||||| || | ||| Sbjct 170883 TTGAAATAATCGCGCATTCTTTGAGCGTATCGTAGATTCCCTCAATGCTGTCCGCCTTCA 170824 Query 63574 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 63633 | | || ||||| || ||| || || | | |||||| | ||||| | ||||| Sbjct 170823 TTGTGAGCAGAAAGCAACTACTCAACTGTGGCTTGCAAGTTCCAGAGTTAAAAAGGGTAG 170764 Query 63634 GAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCT 63678 | |||||||| |||||||||||||| || | ||| || || |||| Sbjct 170763 GCGAAGCGTGGGTAAACCATTTTTCTGACATTAGGTTATATGTCT 170719 Score = 82.4 bits (90), Expect = 1e-10 Identities = 120/168 (71%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| |||||||||||||| || |||||| ||| |||| | || || | || | Sbjct 173887 TCCACCCGTAAAAATGCATTGAAGTGAGTTTGCCATAGTTCGGGTGAGCCATGTATATGT 173828 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 | | ||||| ||| || || |||||||| | ||| |||||||| | ||||| || Sbjct 173827 TAAGGGATTGTGATTGGTCAATAAAGGCTCCACGGTCCGCAGCCATATCGATGATTACCT 173768 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCT 62228 | || ||||||||||||| || || || | ||||| |||||||| Sbjct 173767 TCTGAGGAATTTCCCAAACTGTCTTGTACAGCTCGC---GTATCTTCT 173723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622914837892960