Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_007023.1 Length=180500 Score E Sequences producing significant alignments: (Bits) Value seq732 208 9e-49 >seq732 Length=24842 Score = 208 bits (230), Expect = 9e-49 Identities = 481/721 (67%), Gaps = 49/721 (7%) Strand=Plus/Plus Query 156192 GATGCTTTCCAATCGTATGAATACGAAGTTAACACGCTGCATACTGCCAACGGACAAACA 156251 ||||| ||||| ||| || |||||||| ||||| ||||| || |||||||| || || Sbjct 158 GATGCCTTCCAGTCGCTGGAGTACGAAGTAAACACCCTGCACACCGCCAACGGTCAGACG 217 Query 156252 CCTTTCGTTACTATTACTTTCGGTACTGGTAC-----GGGAATGTTTGAACGGATGATCC 156306 || || || || || ||| ||| || || |||||| || |||| | Sbjct 218 CCGTTTGTAACCTTTGGTTTTGGTCTGGGCACCAGCTGGGAATCG-----CGCCTGATTC 272 Query 156307 AGAAAGCTATTCTGAAAAACCGTATCCGTGGCCTGGGTAAAAAAGGTATTACTCCGGTAT 156366 || || |||| ||| ||||||||| ||||| |||||||| ||| ||| |||| | Sbjct 273 AGGAATCTATCCTGCGTAACCGTATCGCAGGCCTCGGTAAAAACCGTAAAACTGCGGTGT 332 Query 156367 TCCCTAAACTGGT-TATG---TTCATGGAAAAAGGCATTAACCTTGATCCAGAGGATCGC 156422 |||| |||||||| | || ||| | | || | |||| | | || |||| Sbjct 333 TCCCGAAACTGGTGTTTGCGATTCGCG----ATGGTCTGAACCATAAAAAAGGCGATCCG 388 Query 156423 AACTATGACATCAAACAACTGGCTCTGGAATGCGCTTCAAAACGTATGTACCCAGATATC 156482 ||||| ||||||||||| ||||| ||||| ||||| || || ||||| || |||||| Sbjct 389 AACTACGACATCAAACAGCTGGCGCTGGAGTGCGCAAGCAAGCGCATGTATCCGGATATC 448 Query 156483 ATTA-----GTGCATATAATAACCGTCGCATCACTGGTTCTAGCGTTCCTGTATCTCCTA 156537 | | | || || | | ||| || ||||| ||| | | | || | Sbjct 449 CTGAACTACGATCAGGTAGTGAAAGTC-----ACCGGTTC----GTT--TAAAACCCCGA 497 Query 156538 TGGGTTGTCGCAGTTTCCTTAGTGTGTGGCATGATGATAACGGTAATGAAGTTCTGGATG 156597 |||| || ||||| ||||| | |||||| | |||| ||||| | | | | |||| Sbjct 498 TGGGCTGCCGCAGCTTCCTCGGCGTGTGGGAAAATGAAAACGGCGAGCAGATCCACGATG 557 Query 156598 GACGTAATAACCTGGGTGTGGTGACAATCAACCTCCCGCGTATTGCTCTTGAAGCACAAT 156657 | ||||| ||||| || ||| | | | ||||| |||||||||||||| |||||| || Sbjct 558 GTCGTAACAACCTCGGCGTGATCAGCCTGAACCTGCCGCGTATTGCTCTGGAAGCAAAAG 617 Query 156658 CGCAGGAAGATGAAGACGCACATGACGCATTCTGGCGTATCCTTGATGAACGTCTGGAAC 156717 || ||||||| | | |||||| | || ||||||||||||| | Sbjct 618 -GC-----GATGAAGCCACC---------TTCTGGAAGCTGCTGGATGAACGTCTGGTGC 662 Query 156718 TGTGCTTTGAAGCCCTGATGACTCGCATCGATAGCCTACGCGGTGTTAAAGCCAGTGTAG 156777 || | | || |||||||| || |||| | | || || || ||||| | || | Sbjct 663 TGGCACGTAAGGCGCTGATGACCCGTATCGCTCGTCTCGAAGGCGTGAAAGCGCGCGTGG 722 Query 156778 CCCCGATCCTGTACACGGAAGGTGCATTCGGTGTTCGTCTGAATCCTGATGATGAAATCC 156837 |||||||||| || | ||||||||| | || || ||||| ||| |||| ||||| | Sbjct 723 CCCCGATCCTCTATATGGAAGGTGCTTGTGGCGTGCGTCTCAATGCTGACGATGATGTTT 782 Query 156838 TGGAACTGTTCAAAAATGGGCGTAGCTCTATCAGTCTGGGTTATATCGGATTGCATGAAA 156897 ||| | |||||||| || ||| ||||| |||||||| ||||| | || |||| Sbjct 783 CTGAAATCTTCAAAAACGGTCGTGCGTCTATTTCGCTGGGTTACATCGGCATCCACGAAA 842 Query 156898 C 156898 | Sbjct 843 C 843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577442000329600