Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_007049.1 Length=43883 Score E Sequences producing significant alignments: (Bits) Value seq729 95.1 3e-15 >seq729 Length=25020 Score = 95.1 bits (104), Expect = 3e-15 Identities = 204/301 (68%), Gaps = 8/301 (3%) Strand=Plus/Minus Query 34689 GTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGA-ACAACGCCAAATGGTGTGAG 34747 ||| |||| || || |||||||| ||||| || | | ||| ||| ||||||| | Sbjct 1310 GTACTAGTTGGTCGTTTAACAAAGGATCCTGATTTACGCTACACCGC-AAATGGTACAGG 1252 Query 34748 TGTTACCACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAG---AACG 34804 |||| |||| || ||| | || || || | | ||||| || |||| | | | || Sbjct 1251 TGTTGCCACGTTTACTTTAGCTGTGAATCGTAATTTTACGAA---TCAAAGCGGGAATCG 1195 Query 34805 TGAGGCAGACTTTATTAACTGTGTAACTTTTAGAAAACAAGCAGAAAATGTAAATAATTA 34864 ||||| || ||||| || ||||||| || | ||| |||||||| | || |||||| Sbjct 1194 CGAGGCGGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGAAACTTTAGCTAATTA 1135 Query 34865 TTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGCAGTTATGAAAA 34924 | |||||| | | || || ||| ||| | ||| || | | ||||||||| Sbjct 1134 TGCGCGCAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACAAGAAATTATGAAAA 1075 Query 34925 CAAAGACGGGCAACGTGTATTTGTCACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGA 34984 | | ||||||||||| | ||| |||||||| || || || | | | ||||| || || Sbjct 1074 TCAGCAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGAATTTCCAATTATTGGA 1015 Query 34985 A 34985 | Sbjct 1014 A 1014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140297075646840