Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_007049.1
Length=43883
Score E
Sequences producing significant alignments: (Bits) Value
seq729 95.1 3e-15
>seq729
Length=25020
Score = 95.1 bits (104), Expect = 3e-15
Identities = 204/301 (68%), Gaps = 8/301 (3%)
Strand=Plus/Minus
Query 34689 GTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGA-ACAACGCCAAATGGTGTGAG 34747
||| |||| || || |||||||| ||||| || | | ||| ||| ||||||| |
Sbjct 1310 GTACTAGTTGGTCGTTTAACAAAGGATCCTGATTTACGCTACACCGC-AAATGGTACAGG 1252
Query 34748 TGTTACCACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAG---AACG 34804
|||| |||| || ||| | || || || | | ||||| || |||| | | | ||
Sbjct 1251 TGTTGCCACGTTTACTTTAGCTGTGAATCGTAATTTTACGAA---TCAAAGCGGGAATCG 1195
Query 34805 TGAGGCAGACTTTATTAACTGTGTAACTTTTAGAAAACAAGCAGAAAATGTAAATAATTA 34864
||||| || ||||| || ||||||| || | ||| |||||||| | || ||||||
Sbjct 1194 CGAGGCGGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGAAACTTTAGCTAATTA 1135
Query 34865 TTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGCAGTTATGAAAA 34924
| |||||| | | || || ||| ||| | ||| || | | |||||||||
Sbjct 1134 TGCGCGCAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACAAGAAATTATGAAAA 1075
Query 34925 CAAAGACGGGCAACGTGTATTTGTCACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGA 34984
| | ||||||||||| | ||| |||||||| || || || | | | ||||| || ||
Sbjct 1074 TCAGCAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGAATTTCCAATTATTGGA 1015
Query 34985 A 34985
|
Sbjct 1014 A 1014
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 140297075646840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |