Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_007055.1
Length=43681
Score E
Sequences producing significant alignments: (Bits) Value
seq729 113 1e-20
>seq729
Length=25020
Score = 113 bits (124), Expect = 1e-20
Identities = 214/308 (69%), Gaps = 8/308 (3%)
Strand=Plus/Minus
Query 35085 TGATTAACAGAGTCGTATTAGTAGGCCGTTTAACTAAGGATCCTGAATACAGAACGACAC 35144
||||||| | || ||| |||| || |||||||| ||||||||||| | | | ||||
Sbjct 1324 TGATTAATAATGTTGTACTAGTTGGTCGTTTAACAAAGGATCCTGATTTACG--CTACAC 1267
Query 35145 CCTCA--GGCGTAAGTGTAGCGACTTTTACTCTAGCGGTTAATCGTACGTTTACGAATGC 35202
| | || | |||| || || |||||| |||| || ||||||| ||||||||| |
Sbjct 1266 CGCAAATGGTACAGGTGTTGCCACGTTTACTTTAGCTGTGAATCGTAATTTTACGAAT-C 1208
Query 35203 GCAAGGGGAA-CGTGAAGCGGACTTTATTAACTGTGTTGTTTTTAGAAAACAAGCAGAAA 35261
| ||||| || || ||||| ||||| || ||||| ||| | ||| ||||| ||
Sbjct 1207 AAAGCGGGAATCGCGAGGCGGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAG-AA 1149
Query 35262 ACGTAAGC-AATTACTTGTTTAAAGGAAGTCTTGCAGGCGTTGATGGTCGCTTACAATCA 35320
|| | ||| ||||| | ||||||| |||| ||| || ||| || | ||| ||
Sbjct 1148 ACTTTAGCTAATTATGCGCGCAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACA 1089
Query 35321 CGCAGTTACGAAAACCAAGAAGGACGCCGTATCTTTGTTACTGAAGTTGTATGTGACAGT 35380
| | ||| ||||| || |||| | ||| ||| ||| || |||||||| ||| | |
Sbjct 1088 AGAAATTATGAAAATCAGCAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGAAT 1029
Query 35381 GTGCAATT 35388
| |||||
Sbjct 1028 TTCCAATT 1021
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 139650707548296
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |