Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_007055.1 Length=43681 Score E Sequences producing significant alignments: (Bits) Value seq729 113 1e-20 >seq729 Length=25020 Score = 113 bits (124), Expect = 1e-20 Identities = 214/308 (69%), Gaps = 8/308 (3%) Strand=Plus/Minus Query 35085 TGATTAACAGAGTCGTATTAGTAGGCCGTTTAACTAAGGATCCTGAATACAGAACGACAC 35144 ||||||| | || ||| |||| || |||||||| ||||||||||| | | | |||| Sbjct 1324 TGATTAATAATGTTGTACTAGTTGGTCGTTTAACAAAGGATCCTGATTTACG--CTACAC 1267 Query 35145 CCTCA--GGCGTAAGTGTAGCGACTTTTACTCTAGCGGTTAATCGTACGTTTACGAATGC 35202 | | || | |||| || || |||||| |||| || ||||||| ||||||||| | Sbjct 1266 CGCAAATGGTACAGGTGTTGCCACGTTTACTTTAGCTGTGAATCGTAATTTTACGAAT-C 1208 Query 35203 GCAAGGGGAA-CGTGAAGCGGACTTTATTAACTGTGTTGTTTTTAGAAAACAAGCAGAAA 35261 | ||||| || || ||||| ||||| || ||||| ||| | ||| ||||| || Sbjct 1207 AAAGCGGGAATCGCGAGGCGGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAG-AA 1149 Query 35262 ACGTAAGC-AATTACTTGTTTAAAGGAAGTCTTGCAGGCGTTGATGGTCGCTTACAATCA 35320 || | ||| ||||| | ||||||| |||| ||| || ||| || | ||| || Sbjct 1148 ACTTTAGCTAATTATGCGCGCAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACA 1089 Query 35321 CGCAGTTACGAAAACCAAGAAGGACGCCGTATCTTTGTTACTGAAGTTGTATGTGACAGT 35380 | | ||| ||||| || |||| | ||| ||| ||| || |||||||| ||| | | Sbjct 1088 AGAAATTATGAAAATCAGCAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGAAT 1029 Query 35381 GTGCAATT 35388 | ||||| Sbjct 1028 TTCCAATT 1021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139650707548296