Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_007064.1 Length=42431 Score E Sequences producing significant alignments: (Bits) Value seq729 84.2 6e-12 >seq729 Length=25020 Score = 84.2 bits (92), Expect = 6e-12 Identities = 201/296 (68%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 32900 TAGTAGGGCGACTAACGAAAGACCCTGAATATAGA-ACAGCGCCAAATGGTGTGAGTGTG 32958 |||| || || |||| || || ||||| | | ||| ||| ||||||| |||| Sbjct 1306 TAGTTGGTCGTTTAACAAAGGATCCTGATTTACGCTACACCGC-AAATGGTACAGGTGTT 1248 Query 32959 ACCACTTTCACTATCGCAGTTAACAGGACATTCACTAATGCTCAAGGAGAA-CGTGAGGC 33017 |||| || ||| | || || || | | || || ||| | | | ||| || ||||| Sbjct 1247 GCCACGTTTACTTTAGCTGTGAATCGTAATTTTACGAAT-CAAAGCGGGAATCGCGAGGC 1189 Query 33018 AGACTTTATTAACTGTGTAACTTTTAGAAAACAAGCAGAAAATGTAAAAAATTATTTATC 33077 || ||||| || ||||||| || | ||| |||||||| | || |||||| Sbjct 1188 GGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGAAACTTTAGCTAATTATGCGCG 1129 Query 33078 CAAAGGGTCACTGGCAGGTGTAGAC-GGACGATTACAAACACGTAACTACGAAAACAAAG 33136 |||||| | || |||||| ||| || || | |||||| | || || ||||| | Sbjct 1128 CAAAGGAACTCTTTTAGGTGT-GACTGGCCGTATCCAAACAAGAAATTATGAAAATCAGC 1070 Query 33137 ACGGGCAACGTGTATATGTTACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAA 33192 | ||||||||||| ||||| |||||||| || || || | | | ||||| || ||| Sbjct 1069 AAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGAATTTCCAATTATTGGAA 1014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135650904958296