Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq18 98.7 3e-15 >seq18 Length=263653 Score = 98.7 bits (108), Expect = 3e-15 Identities = 235/352 (67%), Gaps = 15/352 (4%) Strand=Plus/Plus Query 22279 GAAATTCAATACCCAGAGGCCAGATGTTTCTATGGTGTGCAAATGATGATTGAAAATGTT 22338 |||||||| ||||||| | || || || || | ||||| || || ||| || Sbjct 149993 GAAATTCAGGTGACAGAGGCTCGCTGCTTTTACGGCTTCCAAATTGCTATAGAGAATATT 150052 Query 22339 CACGCGGAAACATATTCTATGATGCTACAGTCACTCGTAGA----AGATAAAGACGAACA 22394 ||| |||| | ||| | || || | | || |||| | |||| ||| |||| Sbjct 150053 CACTCGGAGATGTATAGTCTGCTGAT----TGACACGTATATTCAAGATGAAGCGGAACG 150108 Query 22395 ACGAAACTTATTCCGCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGC 22454 | || | ||| ||| ||| ||||||| || ||||||| ||||| |||||||| Sbjct 150109 CCACCACCTGTTCAACGCCATTGAGACCATTCCATGCGTTAAGAAGAAGGCCGATTGGGC 150168 Query 22455 GCTGAAATGGAT---GAACAATGAACGTT--CATTCGCGGAACGTCTTATTGCATTTGCT 22509 || |||||| | |||| || || ||||| || || ||| | |||||||| Sbjct 150169 TCTACGATGGATAGCGGACAA--AAAGTCACCATTCAGAGATCGACTTGTAGCATTTGCC 150226 Query 22510 GTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGT 22569 | || || || || |||||||||||| ||| | | || || |||||||| |||||| Sbjct 150227 GCCGTCGAGGGTATATTCTTTTCTGGAAGCTTTGCTTCGATTTTCTGGCTAAAGAAACGT 150286 Query 22570 GCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGG 22621 | | ||||| || || || ||| |||||| | || ||||||||||| Sbjct 150287 GGTCTCATGCCAGGGCTCACTTTTAGCAATGAGCTCATCTCCCGAGATGAGG 150338 Score = 86.0 bits (94), Expect = 2e-11 Identities = 110/150 (73%), Gaps = 10/150 (7%) Strand=Plus/Plus Query 22858 AATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAA 22917 ||||| || || | |||||| | || || |||||||| |||||||||||||| |||| | Sbjct 150622 AATCCGTTCGACTTTATGGAAATGATATCGCTTGAAGGTAAGACCAATTTCTTTGAAAGA 150681 Query 22918 AGAGTTGGTGAATACCAAAAAGCAGGTGTTATGGATGCA--TTGAATGATAGTTCAAAAC 22975 | || || ||||||||||| || || |||| ||| | ||||| ||| | Sbjct 150682 AAGGTGGGCGAATACCAAAAGTGCGGCGTAATGG--GCAATTACAATGAGAGT------C 150733 Query 22976 ACGGATTTACATTAGATGAAGAATTTTAAT 23005 ||| || || ||||||||||| ||||||| Sbjct 150734 ACGTTTTCACCTTAGATGAAGACTTTTAAT 150763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303284198049992