Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq18 98.7 3e-15
>seq18
Length=263653
Score = 98.7 bits (108), Expect = 3e-15
Identities = 235/352 (67%), Gaps = 15/352 (4%)
Strand=Plus/Plus
Query 22279 GAAATTCAATACCCAGAGGCCAGATGTTTCTATGGTGTGCAAATGATGATTGAAAATGTT 22338
|||||||| ||||||| | || || || || | ||||| || || ||| ||
Sbjct 149993 GAAATTCAGGTGACAGAGGCTCGCTGCTTTTACGGCTTCCAAATTGCTATAGAGAATATT 150052
Query 22339 CACGCGGAAACATATTCTATGATGCTACAGTCACTCGTAGA----AGATAAAGACGAACA 22394
||| |||| | ||| | || || | | || |||| | |||| ||| ||||
Sbjct 150053 CACTCGGAGATGTATAGTCTGCTGAT----TGACACGTATATTCAAGATGAAGCGGAACG 150108
Query 22395 ACGAAACTTATTCCGCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGC 22454
| || | ||| ||| ||| ||||||| || ||||||| ||||| ||||||||
Sbjct 150109 CCACCACCTGTTCAACGCCATTGAGACCATTCCATGCGTTAAGAAGAAGGCCGATTGGGC 150168
Query 22455 GCTGAAATGGAT---GAACAATGAACGTT--CATTCGCGGAACGTCTTATTGCATTTGCT 22509
|| |||||| | |||| || || ||||| || || ||| | ||||||||
Sbjct 150169 TCTACGATGGATAGCGGACAA--AAAGTCACCATTCAGAGATCGACTTGTAGCATTTGCC 150226
Query 22510 GTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGT 22569
| || || || || |||||||||||| ||| | | || || |||||||| ||||||
Sbjct 150227 GCCGTCGAGGGTATATTCTTTTCTGGAAGCTTTGCTTCGATTTTCTGGCTAAAGAAACGT 150286
Query 22570 GCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGG 22621
| | ||||| || || || ||| |||||| | || |||||||||||
Sbjct 150287 GGTCTCATGCCAGGGCTCACTTTTAGCAATGAGCTCATCTCCCGAGATGAGG 150338
Score = 86.0 bits (94), Expect = 2e-11
Identities = 110/150 (73%), Gaps = 10/150 (7%)
Strand=Plus/Plus
Query 22858 AATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAA 22917
||||| || || | |||||| | || || |||||||| |||||||||||||| |||| |
Sbjct 150622 AATCCGTTCGACTTTATGGAAATGATATCGCTTGAAGGTAAGACCAATTTCTTTGAAAGA 150681
Query 22918 AGAGTTGGTGAATACCAAAAAGCAGGTGTTATGGATGCA--TTGAATGATAGTTCAAAAC 22975
| || || ||||||||||| || || |||| ||| | ||||| ||| |
Sbjct 150682 AAGGTGGGCGAATACCAAAAGTGCGGCGTAATGG--GCAATTACAATGAGAGT------C 150733
Query 22976 ACGGATTTACATTAGATGAAGAATTTTAAT 23005
||| || || ||||||||||| |||||||
Sbjct 150734 ACGTTTTCACCTTAGATGAAGACTTTTAAT 150763
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303284198049992
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |