Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3204 127 1e-24 seq4062 122 6e-23 seq2742 122 6e-23 seq2729 122 6e-23 seq2596 122 6e-23 seq2155 122 6e-23 seq1905 122 6e-23 seq1873 122 6e-23 seq1861 122 6e-23 seq1839 122 6e-23 seq1782 122 6e-23 seq1930 118 7e-22 seq2842 113 3e-20 seq2389 113 3e-20 seq67 111 1e-19 seq1913 104 2e-17 seq351 104 2e-17 seq1768 93.3 3e-14 seq223 93.3 3e-14 seq685 82.4 5e-11 >seq3204 Length=1553 Score = 127 bits (140), Expect = 1e-24 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG--GGT---AATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| ||| ||||| || Sbjct 566 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACGGTAGGAATCTTGT 625 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 626 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 660 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| | ||||| || Sbjct 15 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 74 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 75 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 109 >seq4062 Length=551 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| | ||||| || Sbjct 550 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 491 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 490 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 456 >seq2742 Length=2201 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| | ||||| || Sbjct 1023 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 964 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 963 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 929 >seq2729 Length=2227 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| | ||||| || Sbjct 1354 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 1413 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 1414 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 1448 >seq2596 Length=2499 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| | ||||| || Sbjct 1013 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 954 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 953 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 919 >seq2155 Length=3733 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| | ||||| || Sbjct 1370 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 1429 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 1430 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 1464 >seq1905 Length=4668 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| | ||||| || Sbjct 3213 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 3154 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 3153 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 3119 >seq1873 Length=4818 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| | ||||| || Sbjct 3071 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 3012 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 3011 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 2977 >seq1861 Length=4896 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| | ||||| || Sbjct 3530 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 3471 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 3470 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 3436 >seq1839 Length=5065 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| | ||||| || Sbjct 2333 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 2274 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 2273 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 2239 >seq1782 Length=5454 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| | ||||| || Sbjct 4104 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 4045 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 4044 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 4010 >seq1930 Length=4564 Score = 118 bits (130), Expect = 7e-22 Identities = 82/93 (88%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| | ||||| || Sbjct 3196 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 3137 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| |||||||||||||||||||||||||| Sbjct 3136 TGATCCATTCATGCGCGTCACTAATTAGATGAC 3104 >seq2842 Length=2044 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 324 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCGT 265 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 264 AGCCGTATTTAGCCTTA 248 >seq2389 Length=3027 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 225 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCGT 166 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 165 AGCCGTATTTAGCCTTA 149 >seq67 Length=175246 Score = 111 bits (122), Expect = 1e-19 Identities = 81/94 (86%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 25903 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGTT 25957 |||||||||| |||||||||||||||||||| |||||||||| | ||||| ||| Sbjct 171466 AGCCCGTTCCGTTGGCTGTGGTTTCGCTAGACGGTAGATAGGGACAGTAGGAATCTTGTT 171407 Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| |||||||||||||||||||||||||||| Sbjct 171406 GATCCATTCATGCGCGTCACTAATTAGATGACGA 171373 >seq1913 Length=4638 Score = 104 bits (114), Expect = 2e-17 Identities = 74/85 (87%), Gaps = 5/85 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| | ||||| || Sbjct 2119 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 2178 Query 25957 TAATCCTTTCATGCGCGTCACTAAT 25981 | |||| |||||||||||||||||| Sbjct 2179 TGATCCATTCATGCGCGTCACTAAT 2203 >seq351 Length=55221 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 || ||||||||||||||||||||||||||||| ||||||||| | ||||| || Sbjct 14903 AAACCCGTTCCCTTGGCTGTGGTTTCGCTAGACGTTAGATAGGGACAGTAGGAATCTTGT 14844 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| |||||||||||||||||||| Sbjct 14843 TGATCCATTCATGCACGTCACTAATTAGATGACGA 14809 >seq1768 Length=5552 Score = 93.3 bits (102), Expect = 3e-14 Identities = 68/79 (86%), Gaps = 5/79 (6%) Strand=Plus/Plus Query 25916 GGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGTTAATCCTTTCATGC 25970 |||||||||||||||||| ||||||||||| | ||||| ||| |||| ||||||| Sbjct 1 GGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGTTGATCCATTCATGC 60 Query 25971 GCGTCACTAATTAGATGAC 25989 ||||||||||||||||||| Sbjct 61 GCGTCACTAATTAGATGAC 79 >seq223 Length=82600 Score = 93.3 bits (102), Expect = 3e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237 ||||| || || | ||||| ||||| | ||||| |||||| |||||| ||||||| | Sbjct 43496 CCGGCGAAGATCAACCGTTGCTGATCCGGGGGGATGCCTTCCTTGTCCTGAATTTTTGCC 43555 Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297 || || |||| || || || | ||| ||||||||||| || ||||| || || || Sbjct 43556 TTTACGTTCTCAACCGTGTCCGAAGGTTCCACTTCTAATGTTATTGTTTTGCCGGTTAAA 43615 Query 38298 GTTTTCACGAATATCTGCATG 38318 || || || || ||||||||| Sbjct 43616 GTCTTGACAAAAATCTGCATG 43636 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237 || ||||| ||||| || |||||||| | || | ||||||||||| ||||| | Sbjct 42634 CCAGCAAAGATTAGTCGCTGTTGATCAGGCGGAATACCTTCTTTGTCTTGTATTTTAGTC 42693 Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297 || ||||| | | |||||| | ||| ||||| | ||||| || || || || | Sbjct 42694 TTTACATTTTCAATAGTATCCGAAGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTTAGA 42753 Query 38298 GTTTTCACGAATATCTGCAT 38317 |||||||||||||||||||| Sbjct 42754 GTTTTCACGAATATCTGCAT 42773 >seq685 Length=27833 Score = 82.4 bits (90), Expect = 5e-11 Identities = 74/93 (80%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGTTA 25958 |||||||||||| || ||| |||||| ||| |||||||||| | ||||| ||| Sbjct 21628 GCCCGTTCCCTTCGCCGTGCTTTCGCCAGACGGTAGATAGGGACAGTAGGAATCTTGTTG 21687 Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| ||||| | |||| ||||||||||||||| Sbjct 21688 ATCCATTCATCCACGTCGCTAATTAGATGACGA 21720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334930234505636