Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq3204 127 1e-24
seq4062 122 6e-23
seq2742 122 6e-23
seq2729 122 6e-23
seq2596 122 6e-23
seq2155 122 6e-23
seq1905 122 6e-23
seq1873 122 6e-23
seq1861 122 6e-23
seq1839 122 6e-23
seq1782 122 6e-23
seq1930 118 7e-22
seq2842 113 3e-20
seq2389 113 3e-20
seq67 111 1e-19
seq1913 104 2e-17
seq351 104 2e-17
seq1768 93.3 3e-14
seq223 93.3 3e-14
seq685 82.4 5e-11
>seq3204
Length=1553
Score = 127 bits (140), Expect = 1e-24
Identities = 86/95 (91%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG--GGT---AATCTCGT 25956
|||||||||||||||||||||||||||||||| ||||||||||| ||| ||||| ||
Sbjct 566 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACGGTAGGAATCTTGT 625
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 626 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 660
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||
Sbjct 15 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 74
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 75 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 109
>seq4062
Length=551
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||
Sbjct 550 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 491
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 490 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 456
>seq2742
Length=2201
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||
Sbjct 1023 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 964
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 963 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 929
>seq2729
Length=2227
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||
Sbjct 1354 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 1413
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 1414 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 1448
>seq2596
Length=2499
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||
Sbjct 1013 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 954
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 953 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 919
>seq2155
Length=3733
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||
Sbjct 1370 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 1429
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 1430 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 1464
>seq1905
Length=4668
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||
Sbjct 3213 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 3154
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 3153 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 3119
>seq1873
Length=4818
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||
Sbjct 3071 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 3012
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 3011 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 2977
>seq1861
Length=4896
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||
Sbjct 3530 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 3471
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 3470 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 3436
>seq1839
Length=5065
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||
Sbjct 2333 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 2274
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 2273 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 2239
>seq1782
Length=5454
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||
Sbjct 4104 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 4045
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 4044 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 4010
>seq1930
Length=4564
Score = 118 bits (130), Expect = 7e-22
Identities = 82/93 (88%), Gaps = 5/93 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||
Sbjct 3196 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 3137
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989
| |||| ||||||||||||||||||||||||||
Sbjct 3136 TGATCCATTCATGCGCGTCACTAATTAGATGAC 3104
>seq2842
Length=2044
Score = 113 bits (124), Expect = 3e-20
Identities = 71/77 (92%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 324 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCGT 265
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 264 AGCCGTATTTAGCCTTA 248
>seq2389
Length=3027
Score = 113 bits (124), Expect = 3e-20
Identities = 71/77 (92%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 225 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCGT 166
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 165 AGCCGTATTTAGCCTTA 149
>seq67
Length=175246
Score = 111 bits (122), Expect = 1e-19
Identities = 81/94 (86%), Gaps = 5/94 (5%)
Strand=Plus/Minus
Query 25903 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGTT 25957
|||||||||| |||||||||||||||||||| |||||||||| | ||||| |||
Sbjct 171466 AGCCCGTTCCGTTGGCTGTGGTTTCGCTAGACGGTAGATAGGGACAGTAGGAATCTTGTT 171407
Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||| ||||||||||||||||||||||||||||
Sbjct 171406 GATCCATTCATGCGCGTCACTAATTAGATGACGA 171373
>seq1913
Length=4638
Score = 104 bits (114), Expect = 2e-17
Identities = 74/85 (87%), Gaps = 5/85 (6%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||
Sbjct 2119 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 2178
Query 25957 TAATCCTTTCATGCGCGTCACTAAT 25981
| |||| ||||||||||||||||||
Sbjct 2179 TGATCCATTCATGCGCGTCACTAAT 2203
>seq351
Length=55221
Score = 104 bits (114), Expect = 2e-17
Identities = 80/95 (84%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|| ||||||||||||||||||||||||||||| ||||||||| | ||||| ||
Sbjct 14903 AAACCCGTTCCCTTGGCTGTGGTTTCGCTAGACGTTAGATAGGGACAGTAGGAATCTTGT 14844
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||| ||||||||||||||||||||
Sbjct 14843 TGATCCATTCATGCACGTCACTAATTAGATGACGA 14809
>seq1768
Length=5552
Score = 93.3 bits (102), Expect = 3e-14
Identities = 68/79 (86%), Gaps = 5/79 (6%)
Strand=Plus/Plus
Query 25916 GGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGTTAATCCTTTCATGC 25970
|||||||||||||||||| ||||||||||| | ||||| ||| |||| |||||||
Sbjct 1 GGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGTTGATCCATTCATGC 60
Query 25971 GCGTCACTAATTAGATGAC 25989
|||||||||||||||||||
Sbjct 61 GCGTCACTAATTAGATGAC 79
>seq223
Length=82600
Score = 93.3 bits (102), Expect = 3e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237
||||| || || | ||||| ||||| | ||||| |||||| |||||| ||||||| |
Sbjct 43496 CCGGCGAAGATCAACCGTTGCTGATCCGGGGGGATGCCTTCCTTGTCCTGAATTTTTGCC 43555
Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297
|| || |||| || || || | ||| ||||||||||| || ||||| || || ||
Sbjct 43556 TTTACGTTCTCAACCGTGTCCGAAGGTTCCACTTCTAATGTTATTGTTTTGCCGGTTAAA 43615
Query 38298 GTTTTCACGAATATCTGCATG 38318
|| || || || |||||||||
Sbjct 43616 GTCTTGACAAAAATCTGCATG 43636
Score = 82.4 bits (90), Expect = 5e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237
|| ||||| ||||| || |||||||| | || | ||||||||||| ||||| |
Sbjct 42634 CCAGCAAAGATTAGTCGCTGTTGATCAGGCGGAATACCTTCTTTGTCTTGTATTTTAGTC 42693
Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297
|| ||||| | | |||||| | ||| ||||| | ||||| || || || || |
Sbjct 42694 TTTACATTTTCAATAGTATCCGAAGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTTAGA 42753
Query 38298 GTTTTCACGAATATCTGCAT 38317
||||||||||||||||||||
Sbjct 42754 GTTTTCACGAATATCTGCAT 42773
>seq685
Length=27833
Score = 82.4 bits (90), Expect = 5e-11
Identities = 74/93 (80%), Gaps = 5/93 (5%)
Strand=Plus/Plus
Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGTTA 25958
|||||||||||| || ||| |||||| ||| |||||||||| | ||||| |||
Sbjct 21628 GCCCGTTCCCTTCGCCGTGCTTTCGCCAGACGGTAGATAGGGACAGTAGGAATCTTGTTG 21687
Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||| ||||| | |||| |||||||||||||||
Sbjct 21688 ATCCATTCATCCACGTCGCTAATTAGATGACGA 21720
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334930234505636
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |