Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq18 196 6e-45 seq63 104 3e-17 >seq18 Length=263653 Score = 196 bits (216), Expect = 6e-45 Identities = 480/733 (65%), Gaps = 71/733 (10%) Strand=Plus/Minus Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 ||||||||||| ||||| | |||| || ||||| || |||||||| | ||||| || Sbjct 150701 TTTTGGTATTCGCCCACCTTTCTTTCAAAGAAATTGGTCTTACCTTCAAGCGATATCATT 150642 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489 ||||| || ||||| ||||| | |||| || || || | | |||| ||| | | Sbjct 150641 TCCATAAAGTCGAACGGATTCTCAGCATTGTATATCTTGTCGCAGTCCAACTCAACCAAC 150582 Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549 || | ||| || || ||||||| ||| ||||| | | |||||||| || || || Sbjct 150581 AAACGATCGGCCACGTATTCTATGTATTGGCACATCAGTACGCAATTCATGCCGATCAGG 150522 Query 32550 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 32609 || || ||||| ||| | ||||| || ||||| ||||| | |||||| ||| ||| Sbjct 150521 TTGACAGGAAGTGCCTCGGTAAGGAACTCTTGCTCAATGGCGACCGCCTCTCGTAT---- 150466 Query 32610 GATCTTACTGTT----TCTTCACTCGG--TG-GATACAATAAATGTTTAAACATCAAACA 32662 ||||| | | |||| ||| | || | | ||| || ||| | |||||| Sbjct 150465 GATCTGCTCGATGCGATCTTTACTGGTCTTGTGTTTCAAG---TGAGAAAATAACAAACA 150409 Query 32663 TGCGAAATCGCAGTGTAGACCCT----------CGT---CTCTACTAATT---------A 32700 ||| ||||| ||||| ||||||| || || || |||| | Sbjct 150408 TGCAAAATCACAGTGCAGACCCTAAAATGAATGCGAAAACTTTAAAAATTGCACAGCCTA 150349 Query 32701 AT----------------------------TCGTTGGAAAACGTGAGTCCGGGCATTAGG 32732 || || ||| ||| ||||| || ||||| || Sbjct 150348 ATGAGCAGTACCTCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGCCCTGGCATGAGA 150289 Query 32733 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACT 32792 ||||| || || ||||| || || || ||||| |||||||||||| || || || || Sbjct 150288 CCACGTTTCTTTAGCCAGAAAATCGAAGCAAAGCTTCCAGAAAAGAATATACCCTCGACG 150229 Query 32793 GCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC-----TGTCATGTATCCACTTTT 32847 || ||||| || | ||||| |||| | | || | |||| |||||| | Sbjct 150228 GCGGCAAATGCTACAAGTCGATCTC--TGAATGGTGACTTTTTGTCCGCTATCCATCGTA 150171 Query 32848 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGt 32907 ||||||||||||||||||| || || || || || ||||| || || || || || | || Sbjct 150170 GAGCCCAATCGGCCTTCTTCTTAACGCATGGAATGGTCTCAATGGCGTTGAACAGGTGGT 150111 Query 32908 ttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAA 32967 ||| ||||| || ||| || ||||||| ||||||||||| ||||| |||| Sbjct 150110 GGCGTTCCGCTTCATCTTGAATATACGTGTCAATCAGCAGACTATACATCTCCGAGTGAA 150051 Query 32968 TGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTG 33027 | || || || || ||||| || ||||| ||||| | |||||| || | ||| | ||| Sbjct 150050 TATTCTCTATAGCAATTTGGAAGCCGTAAAAGCAGCGAGCCTCTGTCACCTGAATTTCCC 149991 Query 33028 TACAAAATCGTTC 33040 | |||| ||||| Sbjct 149990 GAGAAAAGCGTTC 149978 >seq63 Length=178715 Score = 104 bits (114), Expect = 3e-17 Identities = 159/225 (71%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 63311 ATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTT 63368 |||||||| || |||| |||||| | | |||| | || ||||| || || ||| Sbjct 170941 ATATAGCTCCCGGTGGCTCGAATAGAATGGACGTTGA--GCCCAATTCCTCCGGCATTTT 170884 Query 63369 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA 63428 | || || | |||||| ||| | |||||| ||||| ||||| || || || || ||| Sbjct 170883 TTGAAATAATCGCGCATTCTTTGAGCGTATCGTAGATTCCCTCAATGCTGTCCGCCTTCA 170824 Query 63429 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 63488 | | || ||||| || ||| || || | | |||||| | ||||| | ||||| Sbjct 170823 TTGTGAGCAGAAAGCAACTACTCAACTGTGGCTTGCAAGTTCCAGAGTTAAAAAGGGTAG 170764 Query 63489 GAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCT 63533 | |||||||| |||||||||||||| || | ||| || || |||| Sbjct 170763 GCGAAGCGTGGGTAAACCATTTTTCTGACATTAGGTTATATGTCT 170719 Score = 82.4 bits (90), Expect = 1e-10 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 62984 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACAC 63043 || ||| | ||||||| || |||||||| | || || || || | ||||| || ||| Sbjct 171372 TATAATTGGTCGAACTGATCACCCCAAACTTCATCAAGGCCGGGGCTTTCATGTGGGCAC 171313 Query 63044 ATCAACGACCACTCTCCGTCATCCTTCACT-CGTTTCATAAAGAGATCAGGAATCCAAAG 63102 ||||| |||| || || || | ||||| | || ||| || | || || |||||||| Sbjct 171312 ATCAAACACCAATCACCATC-TGCTTCAATACGCCGCATGAATAAGTCTGGTATCCAAAG 171254 Query 63103 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63162 || || | |||||| | | | ||| || || || || ||| | || | || Sbjct 171253 CGCGTAGAACAAATCTCTAGCACGGTTTTCGTCTTTGCCCGTGTTCCTCTTCGCGTGCAG 171194 Query 63163 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63204 ||| | | |||||| | |||||| |||||||||||||| || Sbjct 171193 GAAGTCAAAAATATCTGCATGCCATGGTTCCAAGTATATAGC 171152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633599082817600