Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq223 109 5e-19
>seq223
Length=82600
Score = 109 bits (120), Expect = 5e-19
Identities = 111/142 (78%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||||||||| || || ||||| || ||| | || || ||||||||||| | ||
Sbjct 41356 AATGCAAATATTTGTCAAAACATTGACAGGCAAAACTATAACTCTCGAAGTGGAGCCTTC 41297
Query 25058 TGACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||||||||| | || ||||| || || ||||||||||| ||||| ||||| |
Sbjct 41296 GGACACTATCGA-TAACGTGAAGGCCAAGATACAGGACAAAGAAGGAATTCCTCCTGATC 41238
Query 25117 AACAGCGGATTATTTTTGCCGG 25138
| ||||| | |||||||||||
Sbjct 41237 AGCAGCGTCTGATTTTTGCCGG 41216
Score = 100 bits (110), Expect = 2e-16
Identities = 109/142 (77%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| ||||| || ||||| ||||| ||| | || || | ||||||||| ||||
Sbjct 42208 AATGCAAATTTTTGTGAAAACTTTAACCGGAAAAACAATAACGCTGGAAGTGGAGCCGTC 42149
Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|||||||| || |||| || |||| ||| || || ||||| ||||||||||| |
Sbjct 42148 GGACACTATTGAAAACGTGAAAGCCAAAATTCAG-GATAAGGAAGGTATTCCACCTGATC 42090
Query 25117 AACAGCGGATTATTTTTGCCGG 25138
|||| || | |||||||| ||
Sbjct 42089 AACAACGTTTAATTTTTGCTGG 42068
Score = 95.1 bits (104), Expect = 1e-14
Identities = 107/141 (76%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||||||||| || || || | || || ||| | ||||| ||||||||||| ||||
Sbjct 42491 ATGCAAATATTCGTTAAAACGCTTACTGGAAAAACAATCACCCTCGAAGTGGAGCCGTCA 42432
Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| || || | | || |||||| || ||||||||||| ||||||||||| ||
Sbjct 42431 GACACCATTGAAAACGTTAAAACAAAAATACAA-GACAAAGAAGGCATTCCACCTGATCA 42373
Query 25118 ACAGCGGATTATTTTTGCCGG 25138
||||| | |||||||| ||
Sbjct 42372 GCAGCGATTAATTTTTGCTGG 42352
Score = 95.1 bits (104), Expect = 1e-14
Identities = 110/146 (75%), Gaps = 2/146 (1%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| || || ||||| ||||| || || | ||||| | ||||| ||| ||||
Sbjct 43059 AATGCAAATTTTCGTCAAGACATTGACGGGCAAGACTATCACTCTTGAAGTAGAGCCGTC 43000
Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||| || ||| | ||| | || | ||| ||||||||||| |||||||||||||
Sbjct 42999 AGACACCATTGAGAATGTTAAGACTAAGATTCAA-GACAAAGAAGGTATTCCACCTGACC 42941
Query 25117 AACAGCGGATTATTTTTGCCGGCAAA 25142
| ||||| |||| || || || |||
Sbjct 42940 AGCAGCGTCTTATCTTCGCAGGTAAA 42915
Score = 89.7 bits (98), Expect = 4e-13
Identities = 109/146 (75%), Gaps = 2/146 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| || ||| | || || ||| | ||||| | ||||| ||| ||||
Sbjct 41925 ATGCAAATCTTTGTGAAAACTCTAACTGGCAAAACAATCACCCTGGAAGTCGAGCCGTCG 41866
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || |||||| | ||| | |||| ||| || || || ||||| ||||| |||||
Sbjct 41865 GATACGATCGAGAACGTAAAGACGAAAATTCAA-GATAAGGAGGGGATACCACCCGACCA 41807
Query 25118 ACAGCGGATTATTTTTGCCGGCAAAC 25143
|||||| | ||||| ||||| ||||
Sbjct 41806 ACAGCGCCTGATTTTCGCCGGTAAAC 41781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433306051395140
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |