Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq223 109 5e-19 >seq223 Length=82600 Score = 109 bits (120), Expect = 5e-19 Identities = 111/142 (78%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| || || ||||| || ||| | || || ||||||||||| | || Sbjct 41356 AATGCAAATATTTGTCAAAACATTGACAGGCAAAACTATAACTCTCGAAGTGGAGCCTTC 41297 Query 25058 TGACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||||||||| | || ||||| || || ||||||||||| ||||| ||||| | Sbjct 41296 GGACACTATCGA-TAACGTGAAGGCCAAGATACAGGACAAAGAAGGAATTCCTCCTGATC 41238 Query 25117 AACAGCGGATTATTTTTGCCGG 25138 | ||||| | ||||||||||| Sbjct 41237 AGCAGCGTCTGATTTTTGCCGG 41216 Score = 100 bits (110), Expect = 2e-16 Identities = 109/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || ||||| ||||| ||| | || || | ||||||||| |||| Sbjct 42208 AATGCAAATTTTTGTGAAAACTTTAACCGGAAAAACAATAACGCTGGAAGTGGAGCCGTC 42149 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| || |||| || |||| ||| || || ||||| ||||||||||| | Sbjct 42148 GGACACTATTGAAAACGTGAAAGCCAAAATTCAG-GATAAGGAAGGTATTCCACCTGATC 42090 Query 25117 AACAGCGGATTATTTTTGCCGG 25138 |||| || | |||||||| || Sbjct 42089 AACAACGTTTAATTTTTGCTGG 42068 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || || || | || || ||| | ||||| ||||||||||| |||| Sbjct 42491 ATGCAAATATTCGTTAAAACGCTTACTGGAAAAACAATCACCCTCGAAGTGGAGCCGTCA 42432 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | | || |||||| || ||||||||||| ||||||||||| || Sbjct 42431 GACACCATTGAAAACGTTAAAACAAAAATACAA-GACAAAGAAGGCATTCCACCTGATCA 42373 Query 25118 ACAGCGGATTATTTTTGCCGG 25138 ||||| | |||||||| || Sbjct 42372 GCAGCGATTAATTTTTGCTGG 42352 Score = 95.1 bits (104), Expect = 1e-14 Identities = 110/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| ||||| || || | ||||| | ||||| ||| |||| Sbjct 43059 AATGCAAATTTTCGTCAAGACATTGACGGGCAAGACTATCACTCTTGAAGTAGAGCCGTC 43000 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || ||| | ||| | || | ||| ||||||||||| ||||||||||||| Sbjct 42999 AGACACCATTGAGAATGTTAAGACTAAGATTCAA-GACAAAGAAGGTATTCCACCTGACC 42941 Query 25117 AACAGCGGATTATTTTTGCCGGCAAA 25142 | ||||| |||| || || || ||| Sbjct 42940 AGCAGCGTCTTATCTTCGCAGGTAAA 42915 Score = 89.7 bits (98), Expect = 4e-13 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || ||| | || || ||| | ||||| | ||||| ||| |||| Sbjct 41925 ATGCAAATCTTTGTGAAAACTCTAACTGGCAAAACAATCACCCTGGAAGTCGAGCCGTCG 41866 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || |||||| | ||| | |||| ||| || || || ||||| ||||| ||||| Sbjct 41865 GATACGATCGAGAACGTAAAGACGAAAATTCAA-GATAAGGAGGGGATACCACCCGACCA 41807 Query 25118 ACAGCGGATTATTTTTGCCGGCAAAC 25143 |||||| | ||||| ||||| |||| Sbjct 41806 ACAGCGCCTGATTTTCGCCGGTAAAC 41781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433306051395140