Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_008364.1 Length=26537 Score E Sequences producing significant alignments: (Bits) Value seq729 127 3e-25 >seq729 Length=25020 Score = 127 bits (140), Expect = 3e-25 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 4703 TTTACTTTAGCCGTAAACCGTAACTATAAAAACGACCAAGGACAACGCGAAGCCGACTTT 4762 ||||||||||| || || ||||| | || || | || | ||||| || || ||| Sbjct 1241 TTTACTTTAGCTGTGAATCGTAATTTTACGAATCAAAGCGGGAATCGCGAGGCGGATTTT 1182 Query 4763 ATTAATGTTGTAATCTGGCGAAAGCAAGCCGAATTATTGGCACAGTATGCAACTAAAGGG 4822 || ||| |||||| ||||| || ||| ||| || || | ||||| ||||| Sbjct 1181 ATCAATTGTGTAATTTGGCGGAAATCAGCAGAAACTTTAGCTAATTATGCGCGCAAAGGA 1122 Query 4823 GCTTTAATTGGAATTACGGGACGTATTCAAACAAGAAACTATGAAAATCAACAAGGTCAA 4882 || | | || | || || ||||| ||||||||||| ||||||||||| ||||| ||| Sbjct 1121 ACTCTTTTAGGTGTGACTGGCCGTATCCAAACAAGAAATTATGAAAATCAGCAAGGGCAA 1062 Query 4883 CGTATTTATGTAACCGAAGTTGTAGCCGATAACTTCCAATTATTAGAA 4930 ||| | ||||| || |||||||| || || || ||||||||||| ||| Sbjct 1061 CGTGTCTATGTGACAGAAGTTGTTGCTGAGAATTTCCAATTATTGGAA 1014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 84795925042000