Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_008464.1
Length=60238
Score E
Sequences producing significant alignments: (Bits) Value
seq1066 297 7e-76
>seq1066
Length=13853
Score = 297 bits (328), Expect = 7e-76
Identities = 253/313 (81%), Gaps = 8/313 (3%)
Strand=Plus/Minus
Query 59746 GTCAAAGCAGCAATGTCGCTGGGGCGTCGTGCAATTGGCGTTGAGCTGGAGACTGAACGT 59805
||||||||||| ||| |||||||||||||||||||||| || ||||||||| ||||||||
Sbjct 410 GTCAAAGCAGCGATGGCGCTGGGGCGTCGTGCAATTGGTGTCGAGCTGGAGGCTGAACGT 351
Query 59806 TTTGAGCAGACGGTCAGGGAAGTTCAGGATTTAGTCAGTCAGAACGGATGATATTGCAGG 59865
||||||||||| | || || || ||| ||| | |||| ||| | ||||||||| |
Sbjct 350 TTTGAGCAGACCGCAAGAGATGTACAGAATTCAATCAGAAAGAGAGAGTGATATTGCTGA 291
Query 59866 ATTAGTTACGTACCGTTATTATCCTGCGCCCGGCCCTTTAGCTCAGTGGTGAGAGCGAGC 59925
||| || ||| |||||| || || ||||||||||||||||||||||||||||||
Sbjct 290 ATTTATTCTGTAACGTTATCATTATGTTATCGGCCCTTTAGCTCAGTGGTGAGAGCGAGC 231
Query 59926 GACTCATAATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCATATCACATACCGC 59985
||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
Sbjct 230 GACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA--------ACCAC 179
Query 59986 CATTAGCTCATCGGGACAGAGCGCCAGCCTTCGAAGCTGGCTGCGCGGGGTTCGAGTCCC 60045
|| ||||||||| ||| ||||| || ||||| ||| || | | ||| |||||||||||
Sbjct 178 CACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTGCGAGGTTCGAGTCCT 119
Query 60046 CGATGGCGGTCCA 60058
|| ||| || |||
Sbjct 118 CGGTGGTGGGCCA 106
Score = 123 bits (136), Expect = 1e-23
Identities = 118/151 (78%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 59018 CTGATGCGTGATATCCGGCAGGTTCTTGAGTGCTGGGGGGCATGGGCGGCAAATAACCAT 59077
|||||||||||||| | ||||||||| | ||||||||||||| ||||||||| ||
Sbjct 3056 CTGATGCGTGATATTCAAATGGTTCTTGAACGTTGGGGGGCATGGGTGGCAAATAATCAC 2997
Query 59078 GAGGATGTGACCTGGTCACCCATTGCCGCCGGATTTAAGGGACTGATCCCCGAAAAAGTA 59137
||||||||| |||||| | |||| || || ||||||||| | ||||| ||||||
Sbjct 2996 GAGGATGTGGAATGGTCATCTGTTGCTGCAGGTTTTAAGGGATTAATCCCTTCGAAAGTA 2937
Query 59138 AAATCACGCCCGCAGTGCTGTGACGATGATG 59168
||||| |||||||| || | || || ||||
Sbjct 2936 AAATCCCGCCCGCAATGTAGCGATGACGATG 2906
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 192630492734400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |