Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_008464.1 Length=60238 Score E Sequences producing significant alignments: (Bits) Value seq1066 297 7e-76 >seq1066 Length=13853 Score = 297 bits (328), Expect = 7e-76 Identities = 253/313 (81%), Gaps = 8/313 (3%) Strand=Plus/Minus Query 59746 GTCAAAGCAGCAATGTCGCTGGGGCGTCGTGCAATTGGCGTTGAGCTGGAGACTGAACGT 59805 ||||||||||| ||| |||||||||||||||||||||| || ||||||||| |||||||| Sbjct 410 GTCAAAGCAGCGATGGCGCTGGGGCGTCGTGCAATTGGTGTCGAGCTGGAGGCTGAACGT 351 Query 59806 TTTGAGCAGACGGTCAGGGAAGTTCAGGATTTAGTCAGTCAGAACGGATGATATTGCAGG 59865 ||||||||||| | || || || ||| ||| | |||| ||| | ||||||||| | Sbjct 350 TTTGAGCAGACCGCAAGAGATGTACAGAATTCAATCAGAAAGAGAGAGTGATATTGCTGA 291 Query 59866 ATTAGTTACGTACCGTTATTATCCTGCGCCCGGCCCTTTAGCTCAGTGGTGAGAGCGAGC 59925 ||| || ||| |||||| || || |||||||||||||||||||||||||||||| Sbjct 290 ATTTATTCTGTAACGTTATCATTATGTTATCGGCCCTTTAGCTCAGTGGTGAGAGCGAGC 231 Query 59926 GACTCATAATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCATATCACATACCGC 59985 ||||||||||||||||||||||||||||| ||||||||||||||||| ||| | Sbjct 230 GACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA--------ACCAC 179 Query 59986 CATTAGCTCATCGGGACAGAGCGCCAGCCTTCGAAGCTGGCTGCGCGGGGTTCGAGTCCC 60045 || ||||||||| ||| ||||| || ||||| ||| || | | ||| ||||||||||| Sbjct 178 CACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTGCGAGGTTCGAGTCCT 119 Query 60046 CGATGGCGGTCCA 60058 || ||| || ||| Sbjct 118 CGGTGGTGGGCCA 106 Score = 123 bits (136), Expect = 1e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 59018 CTGATGCGTGATATCCGGCAGGTTCTTGAGTGCTGGGGGGCATGGGCGGCAAATAACCAT 59077 |||||||||||||| | ||||||||| | ||||||||||||| ||||||||| || Sbjct 3056 CTGATGCGTGATATTCAAATGGTTCTTGAACGTTGGGGGGCATGGGTGGCAAATAATCAC 2997 Query 59078 GAGGATGTGACCTGGTCACCCATTGCCGCCGGATTTAAGGGACTGATCCCCGAAAAAGTA 59137 ||||||||| |||||| | |||| || || ||||||||| | ||||| |||||| Sbjct 2996 GAGGATGTGGAATGGTCATCTGTTGCTGCAGGTTTTAAGGGATTAATCCCTTCGAAAGTA 2937 Query 59138 AAATCACGCCCGCAGTGCTGTGACGATGATG 59168 ||||| |||||||| || | || || |||| Sbjct 2936 AAATCCCGCCCGCAATGTAGCGATGACGATG 2906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192630492734400