Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq18 179 4e-40 >seq18 Length=263653 Score = 179 bits (198), Expect = 4e-40 Identities = 255/356 (72%), Gaps = 6/356 (2%) Strand=Plus/Minus Query 93116 TCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTG 93175 || ||||| || || | ||||||||| || || | ||||| | || || |||||||| Sbjct 150336 TCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGCCCTGGCATGAGACCACGTTTCTTT 150277 Query 93176 AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCC 93235 ||||| || || |||||||| || |||||||| |||||||| || ||||| |||||||| Sbjct 150276 AGCCAGAAAATCGAAGCAAAGCTTCCAGAAAAGAATATACCCTCGACGGCGGCAAATGCT 150217 Query 93236 ACAATACGTTCGGCAAAATTTGCGGAATTACTG-CTG--ATCCATTTTAAAGCCCAATCG 93292 |||| || || || || || || || | | |||||| || |||||||||| Sbjct 150216 ACAAGTCGATCTCTGAA---TGGTGACTTTTTGTCCGCTATCCATCGTAGAGCCCAATCG 150160 Query 93293 GCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCC 93352 || || ||||||| || || | || || || ||||| || |||| | || || | Sbjct 150159 GCCTTCTTCTTAACGCATGGAATGGTCTCAATGGCGTTGAACAGGTGGTGGCGTTCCGCT 150100 Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||| | || || || || || | |||| |||||| || || || | |||||| || Sbjct 150099 TCATCTTGAATATACGTGTCAATCAGCAGACTATACATCTCCGAGTGAATATTCTCTATA 150040 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAA 93468 ||||||||||| ||||| || || | ||| || || | ||| | ||| ||||||| Sbjct 150039 GCAATTTGGAAGCCGTAAAAGCAGCGAGCCTCTGTCACCTGAATTTCCCGAGAAAA 149984 Score = 107 bits (118), Expect = 2e-18 Identities = 173/245 (71%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||| || || || ||||||||||| || || ||| ||||||||||||| ||||| ||||| Sbjct 150714 CATTACGCCGCACTTTTGGTATTCGCCCACCTTTCTTTCAAAGAAATTGGTCTTACCTTC 150655 Query 92850 CAAAGATATCGAATTCACT--AGT-GATTGGATTCTTGGCGTTATAATACTTTTCACCGA 92906 | |||||| | ||| | ||| || ||||||| || || || ||| || | | Sbjct 150654 AAGCGATATC-ATTTCCATAAAGTCGAACGGATTCTCAGCATTGTATATCTTGTCGCAGT 150596 Query 92907 TCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAAT 92966 |||||| ||| || | ||| || || |||||||||| || |||||| | |||| Sbjct 150595 CCAACTCAACCAACAAACGATCGGCCACGTATTCTATGTATTGGCACATCAGTACGCAAT 150536 Query 92967 TCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGG 93026 |||| || | || ||||| || || ||||| | ||| |||| ||| || | || | Sbjct 150535 TCATGCCGATCAGGTTGACAGGAAGTGCCTCGGTAAGGAACTCTTGCTCAATGGCGACCG 150476 Query 93027 CTTCT 93031 | ||| Sbjct 150475 CCTCT 150471 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 93491 ACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCA 93550 ||||| |||||||| || || || ||||| | || || | || || || ||||| | Sbjct 149903 ACTATTCCATCGGAAGCGGCGAAGAAAGCGAGTACATACGAGATGAAGTGCTTCTCGTTC 149844 Query 93551 TCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAA 93610 | || ||||| ||||| |||| | ||| | ||| || || || || || |||||| Sbjct 149843 GCGTTCAGCTTTTCCCAGTCGGTCATGTCTCTGCTAAGGTCAACCTCCTCAACCGTCCAA 149784 Query 93611 AACGATGCTTCTGCTTTTTTGTACATATC-CCATATGTCTTGATATTGAATTGGAAATAT 93669 || || || || ||||||||||| ||| | ||| ||||| ||||||| | || || | Sbjct 149783 AATGAAGCCTCGGCTTTTTTGTA-ATAGCTCCAAATGTCCGGATATTGCAGAGGCAACAG 149725 Query 93670 GACAAAACGATTAGGGTT 93687 ||||| || || || || Sbjct 149724 CACAAAGCGTTTTGGATT 149707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556831871081440