Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq223 109 5e-19 >seq223 Length=82600 Score = 109 bits (120), Expect = 5e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||||||||||||| ||||| | || || |||||||| | | Sbjct 42207 ATGCAAATTTTTGTGAAAACTTTAACCGGAAAAACAATAACGCTGGAAGTGGAGCCGTCG 42148 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | ||| |||||||| || ||||| ||||||||||| |||||| Sbjct 42147 GACACTATTGAAAACGTGAAAGCCAAAATTCAGGATAAGGAAGGTATTCCACCTGATCAA 42088 Query 22339 CAACGTCTTATATTTGCCGG 22358 |||||| | || ||||| || Sbjct 42087 CAACGTTTAATTTTTGCTGG 42068 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| |||||| |||| || ||||| |||| || ||||| || | | Sbjct 41925 ATGCAAATCTTTGTGAAAACTCTAACTGGCAAAACAATCACCCTGGAAGTCGAGCCGTCG 41866 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | || ||||||||||| |||||||| || |||||||| ||| Sbjct 41865 GATACGATCGAGAACGTAAAGACGAAAATTCAAGATAAGGAGGGGATACCACCCGACCAA 41806 Query 22339 CAACGTCTTATATTTGCCGGCAAAC 22363 || || || || || ||||| |||| Sbjct 41805 CAGCGCCTGATTTTCGCCGGTAAAC 41781 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || || || || || || ||||||||||||| || | | Sbjct 43058 ATGCAAATTTTCGTCAAGACATTGACGGGCAAGACTATCACTCTTGAAGTAGAGCCGTCA 42999 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || ||||||||||| || ||||||||||| || || Sbjct 42998 GACACCATTGAGAATGTTAAGACTAAGATTCAAGACAAAGAAGGTATTCCACCTGACCAG 42939 Query 22339 CAACGTCTTATATTTGCCGGCAAA 22362 || |||||||| || || || ||| Sbjct 42938 CAGCGTCTTATCTTCGCAGGTAAA 42915 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || ||||||||||| ||||| | || | ||||||||| | | Sbjct 43635 ATGCAGATTTTTGTCAAGACTTTAACCGGCAAAACAATAACATTAGAAGTGGAACCTTCG 43576 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || || || | | || ||||||||| |||||||| || || || || ||||| Sbjct 43575 GACACGGTTGAGAACGTAAAGGCAAAAATTCAGGACAAGGAAGGCATCCCCCCGGATCAG 43516 Query 22339 CAACGTCTTATATTTGCCGG 22358 ||||| | || || ||||| Sbjct 43515 CAACGGTTGATCTTCGCCGG 43496 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| ||||||| ||||| | || || ||||| || | || Sbjct 43339 ATGCAGATATTTGTGAAAACGCTAACCGGCAAAACTATTACGCTGGAAGTTGAGCCGTCC 43280 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || ||||||||||| ||||| || || || || ||||| Sbjct 43279 GATACCATTGATAACGTGAAGACGAAAATTCAAGATAAGGAAGGAATCCCTCCAGATCAG 43220 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 || || || || |||||||| || Sbjct 43219 CAGCGACTAATCTTTGCCGGTAA 43197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419706740252140