Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq223 109 5e-19
>seq223
Length=82600
Score = 109 bits (120), Expect = 5e-19
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||||||||| |||||||||||||| ||||| | || || |||||||| | |
Sbjct 42207 ATGCAAATTTTTGTGAAAACTTTAACCGGAAAAACAATAACGCTGGAAGTGGAGCCGTCG 42148
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | || | | ||| |||||||| || ||||| ||||||||||| ||||||
Sbjct 42147 GACACTATTGAAAACGTGAAAGCCAAAATTCAGGATAAGGAAGGTATTCCACCTGATCAA 42088
Query 22339 CAACGTCTTATATTTGCCGG 22358
|||||| | || ||||| ||
Sbjct 42087 CAACGTTTAATTTTTGCTGG 42068
Score = 95.1 bits (104), Expect = 1e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| ||||| |||||| |||| || ||||| |||| || ||||| || | |
Sbjct 41925 ATGCAAATCTTTGTGAAAACTCTAACTGGCAAAACAATCACCCTGGAAGTCGAGCCGTCG 41866
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || | | || ||||||||||| |||||||| || |||||||| |||
Sbjct 41865 GATACGATCGAGAACGTAAAGACGAAAATTCAAGATAAGGAGGGGATACCACCCGACCAA 41806
Query 22339 CAACGTCTTATATTTGCCGGCAAAC 22363
|| || || || || ||||| ||||
Sbjct 41805 CAGCGCCTGATTTTCGCCGGTAAAC 41781
Score = 89.7 bits (98), Expect = 4e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| || || || || || || || || ||||||||||||| || | |
Sbjct 43058 ATGCAAATTTTCGTCAAGACATTGACGGGCAAGACTATCACTCTTGAAGTAGAGCCGTCA 42999
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || || | || || ||||||||||| || ||||||||||| || ||
Sbjct 42998 GACACCATTGAGAATGTTAAGACTAAGATTCAAGACAAAGAAGGTATTCCACCTGACCAG 42939
Query 22339 CAACGTCTTATATTTGCCGGCAAA 22362
|| |||||||| || || || |||
Sbjct 42938 CAGCGTCTTATCTTCGCAGGTAAA 42915
Score = 86.0 bits (94), Expect = 5e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| |||||||| || ||||||||||| ||||| | || | ||||||||| | |
Sbjct 43635 ATGCAGATTTTTGTCAAGACTTTAACCGGCAAAACAATAACATTAGAAGTGGAACCTTCG 43576
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || || || | | || ||||||||| |||||||| || || || || |||||
Sbjct 43575 GACACGGTTGAGAACGTAAAGGCAAAAATTCAGGACAAGGAAGGCATCCCCCCGGATCAG 43516
Query 22339 CAACGTCTTATATTTGCCGG 22358
||||| | || || |||||
Sbjct 43515 CAACGGTTGATCTTCGCCGG 43496
Score = 82.4 bits (90), Expect = 6e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| ||||| ||||||| ||||| | || || ||||| || | ||
Sbjct 43339 ATGCAGATATTTGTGAAAACGCTAACCGGCAAAACTATTACGCTGGAAGTTGAGCCGTCC 43280
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | || | | || ||||||||||| ||||| || || || || |||||
Sbjct 43279 GATACCATTGATAACGTGAAGACGAAAATTCAAGATAAGGAAGGAATCCCTCCAGATCAG 43220
Query 22339 CAACGTCTTATATTTGCCGGCAA 22361
|| || || || |||||||| ||
Sbjct 43219 CAGCGACTAATCTTTGCCGGTAA 43197
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419706740252140
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |