Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_008721.2 Length=36019 Score E Sequences producing significant alignments: (Bits) Value seq729 134 3e-27 >seq729 Length=25020 Score = 134 bits (148), Expect = 3e-27 Identities = 221/315 (70%), Gaps = 8/315 (3%) Strand=Plus/Minus Query 19465 TGATTAACAATGTAGTACTAGTGGGTCGCATGACTCGTGATGCAGAACTTCGTTATACTC 19524 ||||||| ||||| |||||||| ||||| | || ||| | || | || || || Sbjct 1324 TGATTAATAATGTTGTACTAGTTGGTCGTTTAACAAAGGATCCTGATTTACGCTACAC-- 1267 Query 19525 CGTCAAAC----CAGGCTGTTGCGACTTTTACTCTAGCAGTTAACCGCAATTTTAAAAAT 19580 || |||| |||| |||||| || |||||| |||| || || || ||||||| ||| Sbjct 1266 CG-CAAATGGTACAGG-TGTTGCCACGTTTACTTTAGCTGTGAATCGTAATTTTACGAAT 1209 Query 19581 CAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTTGGCGTCAGCAAGCCGAA 19640 |||| ||| | || || ||||| |||||||| || |||||||| | ||| ||| Sbjct 1208 CAAAGCGGGAATCGCGAGGCGGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGAA 1149 Query 19641 AACTTGGCGAACTGGGTTAAGAAAGGTGCTCTGATTGGAATTACAGGTCGCATTCAGACT 19700 | || || || | | ||||| |||| | || | || || || || || || Sbjct 1148 ACTTTAGCTAATTATGCGCGCAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACA 1089 Query 19701 CGTAGCTATGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGT 19760 | | ||||| ||||||||||||||||||||||| || || || || ||||| || | | Sbjct 1088 AGAAATTATGAAAATCAGCAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGAAT 1029 Query 19761 TTCCAACTCTTGGAA 19775 |||||| | |||||| Sbjct 1028 TTCCAATTATTGGAA 1014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 115133517592632