Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_008721.2
Length=36019
Score E
Sequences producing significant alignments: (Bits) Value
seq729 134 3e-27
>seq729
Length=25020
Score = 134 bits (148), Expect = 3e-27
Identities = 221/315 (70%), Gaps = 8/315 (3%)
Strand=Plus/Minus
Query 19465 TGATTAACAATGTAGTACTAGTGGGTCGCATGACTCGTGATGCAGAACTTCGTTATACTC 19524
||||||| ||||| |||||||| ||||| | || ||| | || | || || ||
Sbjct 1324 TGATTAATAATGTTGTACTAGTTGGTCGTTTAACAAAGGATCCTGATTTACGCTACAC-- 1267
Query 19525 CGTCAAAC----CAGGCTGTTGCGACTTTTACTCTAGCAGTTAACCGCAATTTTAAAAAT 19580
|| |||| |||| |||||| || |||||| |||| || || || ||||||| |||
Sbjct 1266 CG-CAAATGGTACAGG-TGTTGCCACGTTTACTTTAGCTGTGAATCGTAATTTTACGAAT 1209
Query 19581 CAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTTGGCGTCAGCAAGCCGAA 19640
|||| ||| | || || ||||| |||||||| || |||||||| | ||| |||
Sbjct 1208 CAAAGCGGGAATCGCGAGGCGGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGAA 1149
Query 19641 AACTTGGCGAACTGGGTTAAGAAAGGTGCTCTGATTGGAATTACAGGTCGCATTCAGACT 19700
| || || || | | ||||| |||| | || | || || || || || ||
Sbjct 1148 ACTTTAGCTAATTATGCGCGCAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACA 1089
Query 19701 CGTAGCTATGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGT 19760
| | ||||| ||||||||||||||||||||||| || || || || ||||| || | |
Sbjct 1088 AGAAATTATGAAAATCAGCAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGAAT 1029
Query 19761 TTCCAACTCTTGGAA 19775
|||||| | ||||||
Sbjct 1028 TTCCAATTATTGGAA 1014
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 115133517592632
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |