Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq223 111 3e-19
seq1605 96.9 6e-15
>seq223
Length=82600
Score = 111 bits (122), Expect = 3e-19
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| || ||||| || || | || ||||| |||||||| ||||| ||||||||||||||
Sbjct 42916 TTACCTGCGAAGATAAGACGCTGCTGGTCAGGTGGAATACCTTCTTTGTCTTGAATCTTA 42975
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438
| ||| || ||| |||||||||| | |||||||| | ||||| || || |||||
Sbjct 42976 GTCTTAACATTCTCAATGGTGTCTGACGGCTCTACTTCAAGAGTGATAGTCTTGCCCGTC 43035
Query 68439 AGGGTCTTGACGAATATCTGCATT 68462
| ||||||||||| || ||||||
Sbjct 43036 AATGTCTTGACGAAAATTTGCATT 43059
Score = 100 bits (110), Expect = 5e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| |||||||| || || | |||||||||||||| || || ||||| |||||||| ||
Sbjct 41783 TTACCGGCGAAAATCAGGCGCTGTTGGTCGGGTGGTATCCCCTCCTTATCTTGAATTTTC 41842
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438
| ||| ||| |||||| || || | | || ||||||| |||||| ||||| || ||
Sbjct 41843 GTCTTTACGTTCTCGATCGTATCCGACGGCTCGACTTCCAGGGTGATTGTTTTGCCAGTT 41902
Query 68439 AGGGTCTTGACGAATATCTGCAT 68461
|| || || || || || |||||
Sbjct 41903 AGAGTTTTCACAAAGATTTGCAT 41925
Score = 100 bits (110), Expect = 5e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || || || | || || || || |||||||||||||| |||||||| || ||||
Sbjct 42352 CCAGCAAAAATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGTATTTTTGTT 42411
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| ||| || |||||||||| | || ||||| | |||||| |||||||| || ||
Sbjct 42412 TTAACGTTTTCAATGGTGTCTGACGGCTCCACTTCGAGGGTGATTGTTTTTCCAGTAAGC 42471
Query 68442 GTCTTGACGAATATCTGCAT 68461
|| || |||||||| |||||
Sbjct 42472 GTTTTAACGAATATTTGCAT 42491
Score = 100 bits (110), Expect = 5e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|||||||| || | | ||| || || || || |||||||||||||| ||||| ||||||
Sbjct 43496 CCGGCGAAGATCAACCGTTGCTGATCCGGGGGGATGCCTTCCTTGTCCTGAATTTTTGCC 43555
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| ||| ||| | ||||| | | ||| ||||| || || || ||||| || || |
Sbjct 43556 TTTACGTTCTCAACCGTGTCCGAAGGTTCCACTTCTAATGTTATTGTTTTGCCGGTTAAA 43615
Query 68442 GTCTTGACGAATATCTGCAT 68461
|||||||| || ||||||||
Sbjct 43616 GTCTTGACAAAAATCTGCAT 43635
Score = 93.3 bits (102), Expect = 8e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| ||||| || || | ||||| || || |||||||||||||| |||||||| || |
Sbjct 43777 CCTGCGAAGATTAGACGCTGTTGATCCGGAGGAATGCCTTCCTTATCTTGAATTTTATTC 43836
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| || || || | ||| | | || ||||| | || |||||||||||||||||
Sbjct 43837 TTCACATTTTCAATTGAGTCAGACGGCTCAACTTCAAGCGTAATGGTTTTTCCCGTGAGC 43896
Query 68442 GTCTTGACGAATATCTGCATT 68462
|| || ||||| |||||||||
Sbjct 43897 GTTTTCACGAAAATCTGCATT 43917
Score = 84.2 bits (92), Expect = 4e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| || || || || | || || || || ||||| || || || |||||||| |||||
Sbjct 41495 TTACCTGCAAAAATTAATCGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATCTTC 41554
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438
|||||||| || ||||| || | | || |||||||| || || || || || ||
Sbjct 41555 GCCTTGACATTTTCTATGGTATCCGAAGGCTCCACTTCCAAAGTAATAGTCTTCCCTGTC 41614
Query 68439 AGGGTCTTGACGAATATCTGCATT 68462
|| || || |||||||||||||||
Sbjct 41615 AGCGTTTTCACGAATATCTGCATT 41638
Score = 84.2 bits (92), Expect = 4e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377
||| ||||| || || |||| || || || || || || |||||||| |||||||| ||
Sbjct 43196 CTTACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATTCCTTCCTTATCTTGAATTTT 43255
Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437
| ||| ||| || ||||| || | | || ||||||| || || ||||| || ||
Sbjct 43256 CGTCTTCACGTTATCAATGGTATCGGACGGCTCAACTTCCAGCGTAATAGTTTTGCCGGT 43315
Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461
|| || || || |||||||||||
Sbjct 43316 TAGCGTTTTCACAAATATCTGCAT 43339
>seq1605
Length=6830
Score = 96.9 bits (106), Expect = 6e-15
Identities = 196/289 (68%), Gaps = 4/289 (1%)
Strand=Plus/Plus
Query 268196 ACAGAATACTGGACCCCAGTTGCAATCACAAAGTCCTCTGGCTCAGGAGACTGGAGCATT 268255
|| || ||||| || || || || || || || || || |||| ||| |||||
Sbjct 6544 ACGGAGTACTGAACGCCGGTCGCGATAACGAAATCTTCCGGCTGTTCCTGCTGCAGCATC 6603
Query 268256 TTCCACATTGC--TTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGT 268313
||||| ||| || || ||||| || |||||||| || ||| | ||||| |
Sbjct 6604 ATCCAC--TGCATTTTTACGTAGTCTTTGGCGTGGCCCCAGTCACGCAGGGAATCCATAT 6661
Query 268314 TCCCGAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGAGTGATTT 268373
| |||||| ||||||| || | || | | | || | |||| |||||||
Sbjct 6662 TGCCGAGGTACAGGCACGACTCCAGCCCCTGGGCGATGTTGGCGATTGCGCGGGTGATTT 6721
Query 268374 TTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGC 268433
| ||||| ||||| || ||||| || | ||| || ||||||||||| || ||||| |
Sbjct 6722 TGCGGGTAACGAAGGTTTCGCCGCGGCGCGGGGATTCATGGTTGAAGAGAATTCCGTTAC 6781
Query 268434 ACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGC 268482
| ||| ||||||| || | ||||||||||| ||| ||||||| ||
Sbjct 6782 AGGCGTACATGCCGTAGGATTCACGGTAGTTAACGGTGATCCAGTAGGC 6830
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921574521716320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |