Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq223 111 3e-19 seq1605 96.9 6e-15 >seq223 Length=82600 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || ||||| || || | || ||||| |||||||| ||||| |||||||||||||| Sbjct 42916 TTACCTGCGAAGATAAGACGCTGCTGGTCAGGTGGAATACCTTCTTTGTCTTGAATCTTA 42975 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 | ||| || ||| |||||||||| | |||||||| | ||||| || || ||||| Sbjct 42976 GTCTTAACATTCTCAATGGTGTCTGACGGCTCTACTTCAAGAGTGATAGTCTTGCCCGTC 43035 Query 68439 AGGGTCTTGACGAATATCTGCATT 68462 | ||||||||||| || |||||| Sbjct 43036 AATGTCTTGACGAAAATTTGCATT 43059 Score = 100 bits (110), Expect = 5e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || |||||||| || || | |||||||||||||| || || ||||| |||||||| || Sbjct 41783 TTACCGGCGAAAATCAGGCGCTGTTGGTCGGGTGGTATCCCCTCCTTATCTTGAATTTTC 41842 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 | ||| ||| |||||| || || | | || ||||||| |||||| ||||| || || Sbjct 41843 GTCTTTACGTTCTCGATCGTATCCGACGGCTCGACTTCCAGGGTGATTGTTTTGCCAGTT 41902 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 || || || || || || ||||| Sbjct 41903 AGAGTTTTCACAAAGATTTGCAT 41925 Score = 100 bits (110), Expect = 5e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || | || || || || |||||||||||||| |||||||| || |||| Sbjct 42352 CCAGCAAAAATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGTATTTTTGTT 42411 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || ||| || |||||||||| | || ||||| | |||||| |||||||| || || Sbjct 42412 TTAACGTTTTCAATGGTGTCTGACGGCTCCACTTCGAGGGTGATTGTTTTTCCAGTAAGC 42471 Query 68442 GTCTTGACGAATATCTGCAT 68461 || || |||||||| ||||| Sbjct 42472 GTTTTAACGAATATTTGCAT 42491 Score = 100 bits (110), Expect = 5e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 |||||||| || | | ||| || || || || |||||||||||||| ||||| |||||| Sbjct 43496 CCGGCGAAGATCAACCGTTGCTGATCCGGGGGGATGCCTTCCTTGTCCTGAATTTTTGCC 43555 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || ||| ||| | ||||| | | ||| ||||| || || || ||||| || || | Sbjct 43556 TTTACGTTCTCAACCGTGTCCGAAGGTTCCACTTCTAATGTTATTGTTTTGCCGGTTAAA 43615 Query 68442 GTCTTGACGAATATCTGCAT 68461 |||||||| || |||||||| Sbjct 43616 GTCTTGACAAAAATCTGCAT 43635 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| || || | ||||| || || |||||||||||||| |||||||| || | Sbjct 43777 CCTGCGAAGATTAGACGCTGTTGATCCGGAGGAATGCCTTCCTTATCTTGAATTTTATTC 43836 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || || || | ||| | | || ||||| | || ||||||||||||||||| Sbjct 43837 TTCACATTTTCAATTGAGTCAGACGGCTCAACTTCAAGCGTAATGGTTTTTCCCGTGAGC 43896 Query 68442 GTCTTGACGAATATCTGCATT 68462 || || ||||| ||||||||| Sbjct 43897 GTTTTCACGAAAATCTGCATT 43917 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || || || | || || || || ||||| || || || |||||||| ||||| Sbjct 41495 TTACCTGCAAAAATTAATCGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATCTTC 41554 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 |||||||| || ||||| || | | || |||||||| || || || || || || Sbjct 41555 GCCTTGACATTTTCTATGGTATCCGAAGGCTCCACTTCCAAAGTAATAGTCTTCCCTGTC 41614 Query 68439 AGGGTCTTGACGAATATCTGCATT 68462 || || || ||||||||||||||| Sbjct 41615 AGCGTTTTCACGAATATCTGCATT 41638 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| ||||| || || |||| || || || || || || |||||||| |||||||| || Sbjct 43196 CTTACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATTCCTTCCTTATCTTGAATTTT 43255 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 | ||| ||| || ||||| || | | || ||||||| || || ||||| || || Sbjct 43256 CGTCTTCACGTTATCAATGGTATCGGACGGCTCAACTTCCAGCGTAATAGTTTTGCCGGT 43315 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 || || || || ||||||||||| Sbjct 43316 TAGCGTTTTCACAAATATCTGCAT 43339 >seq1605 Length=6830 Score = 96.9 bits (106), Expect = 6e-15 Identities = 196/289 (68%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 268196 ACAGAATACTGGACCCCAGTTGCAATCACAAAGTCCTCTGGCTCAGGAGACTGGAGCATT 268255 || || ||||| || || || || || || || || || |||| ||| ||||| Sbjct 6544 ACGGAGTACTGAACGCCGGTCGCGATAACGAAATCTTCCGGCTGTTCCTGCTGCAGCATC 6603 Query 268256 TTCCACATTGC--TTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGT 268313 ||||| ||| || || ||||| || |||||||| || ||| | ||||| | Sbjct 6604 ATCCAC--TGCATTTTTACGTAGTCTTTGGCGTGGCCCCAGTCACGCAGGGAATCCATAT 6661 Query 268314 TCCCGAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGAGTGATTT 268373 | |||||| ||||||| || | || | | | || | |||| ||||||| Sbjct 6662 TGCCGAGGTACAGGCACGACTCCAGCCCCTGGGCGATGTTGGCGATTGCGCGGGTGATTT 6721 Query 268374 TTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGC 268433 | ||||| ||||| || ||||| || | ||| || ||||||||||| || ||||| | Sbjct 6722 TGCGGGTAACGAAGGTTTCGCCGCGGCGCGGGGATTCATGGTTGAAGAGAATTCCGTTAC 6781 Query 268434 ACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGC 268482 | ||| ||||||| || | ||||||||||| ||| ||||||| || Sbjct 6782 AGGCGTACATGCCGTAGGATTCACGGTAGTTAACGGTGATCCAGTAGGC 6830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921574521716320