Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_009018.1 Length=38528 Score E Sequences producing significant alignments: (Bits) Value seq729 140 8e-29 >seq729 Length=25020 Score = 140 bits (154), Expect = 8e-29 Identities = 163/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 7062 GTTTACTTTAGCAGTTAATCGTAATTTTAAAAATCAAGATGGACAAAAAGAAGCTGATTT 7121 |||||||||||| || ||||||||||||| |||||| || | || || ||||| Sbjct 1242 GTTTACTTTAGCTGTGAATCGTAATTTTACGAATCAAAGCGGGAATCGCGAGGCGGATTT 1183 Query 7122 TATTAATTGTGTGATGTGGCGACAAGCTGCTGAAAATTTAACAAATTGGACTAAAAAGGG 7181 ||| |||||||| || ||||| || | || |||| |||| | |||| | || || Sbjct 1182 TATCAATTGTGTAATTTGGCGGAAATCAGCAGAAACTTTAGCTAATTATGCGCGCAAAGG 1123 Query 7182 GCATCTGATTGCGATAACAGGCCGCATCCAAACCCGTAACTATGAGAATCAACAAGGTCA 7241 ||| | | | || ||||| |||||||| | || ||||| ||||| ||||| || Sbjct 1122 AACTCTTTTAGGTGTGACTGGCCGTATCCAAACAAGAAATTATGAAAATCAGCAAGGGCA 1063 Query 7242 ACGTGTTTATGTGACAGAAGTTGTTGCTGAAAGCTTCCAA 7281 |||||| ||||||||||||||||||||||| | |||||| Sbjct 1062 ACGTGTCTATGTGACAGAAGTTGTTGCTGAGAATTTCCAA 1023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123161921351280