Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq18 134 3e-26 >seq18 Length=263653 Score = 134 bits (148), Expect = 3e-26 Identities = 239/342 (70%), Gaps = 10/342 (3%) Strand=Plus/Plus Query 42501 GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTAC 42560 ||||| |||||||| ||||||||||| || || |||||||| | ||||| ||| |||| Sbjct 150008 GAGGCTCGCTGCTTTTACGGCTTCCAAATTGCTATAGAGAATATTCACTCGGAGATGTA- 150066 Query 42561 GCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAG 42617 | ||||| | ||||||| || | ||| | || || || |||||||| Sbjct 150067 --TAGTCTGCTGATTGACACGTATATTCAAGATGAAGCGGAACGCCACCACCTGTTCAAC 150124 Query 42618 GCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAG 42677 ||||| ||||| || || ||| | ||||||||||| || ||||| || ||||| | | Sbjct 150125 GCCATTGAGACCATTCCATGCGTTAAGAAGAAGGCCGATTGGGCTCTACGATGGATAGCG 150184 Query 42678 AGTCCCGACG-CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTT 42736 | | | | || | ||| | || | || ||||| ||| ||||||||||||| || || Sbjct 150185 -GACAAAAAGTCACCATTCAGAGATCGACTTGTAGCATTTGCCGCCGTCGAGGGTATATT 150243 Query 42737 CTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGAC 42795 ||| || || ||| || || || |||||||| ||| | | | ||| ||||| || | Sbjct 150244 CTTTTCTGGAAGCTTTGCTTCGATTTTCTGGCTAAAG-AAACGTGGTCTCATGCCAGGGC 150302 Query 42796 TCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 |||| || || || |||||| | | || |||| |||| Sbjct 150303 TCACTTTTAGCAATGAGCTCATCTCCCGAGATGAGGTACTGC 150344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944290141578560