Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq18 134 3e-26
>seq18
Length=263653
Score = 134 bits (148), Expect = 3e-26
Identities = 239/342 (70%), Gaps = 10/342 (3%)
Strand=Plus/Plus
Query 42501 GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTAC 42560
||||| |||||||| ||||||||||| || || |||||||| | ||||| ||| ||||
Sbjct 150008 GAGGCTCGCTGCTTTTACGGCTTCCAAATTGCTATAGAGAATATTCACTCGGAGATGTA- 150066
Query 42561 GCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAG 42617
| ||||| | ||||||| || | ||| | || || || ||||||||
Sbjct 150067 --TAGTCTGCTGATTGACACGTATATTCAAGATGAAGCGGAACGCCACCACCTGTTCAAC 150124
Query 42618 GCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAG 42677
||||| ||||| || || ||| | ||||||||||| || ||||| || ||||| | |
Sbjct 150125 GCCATTGAGACCATTCCATGCGTTAAGAAGAAGGCCGATTGGGCTCTACGATGGATAGCG 150184
Query 42678 AGTCCCGACG-CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTT 42736
| | | | || | ||| | || | || ||||| ||| ||||||||||||| || ||
Sbjct 150185 -GACAAAAAGTCACCATTCAGAGATCGACTTGTAGCATTTGCCGCCGTCGAGGGTATATT 150243
Query 42737 CTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGAC 42795
||| || || ||| || || || |||||||| ||| | | | ||| ||||| || |
Sbjct 150244 CTTTTCTGGAAGCTTTGCTTCGATTTTCTGGCTAAAG-AAACGTGGTCTCATGCCAGGGC 150302
Query 42796 TCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837
|||| || || || |||||| | | || |||| ||||
Sbjct 150303 TCACTTTTAGCAATGAGCTCATCTCCCGAGATGAGGTACTGC 150344
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944290141578560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |