Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_009542.2 Length=33985 Score E Sequences producing significant alignments: (Bits) Value seq1066 91.5 3e-14 >seq1066 Length=13853 Score = 91.5 bits (100), Expect = 3e-14 Identities = 145/204 (71%), Gaps = 3/204 (1%) Strand=Plus/Minus Query 22478 CCTT-TACCGATGTCTGGACCTACCCCTCGGTGCAGGCTTACCCGGGCAAGCACCCTTGC 22536 |||| ||| ||||||||||| || | |||||| ||| |||||||| || || || Sbjct 563 CCTTATACGGATGTCTGGACGCACAAGCCTGTGCAGTATTATCCGGGCAAACATCCCTGT 504 Query 22537 GAAAAGCCCGCTGCCATGATGGAGCACATCGTGCGCACCAGCAGCCGGCCAGGTGATGTT 22596 ||||| || || | ||| || ||| || | ||||||| || || ||||| | Sbjct 503 GAAAAACCGGCAGATATGTTGCGGCAAATGATTACTGCCAGCAGTCGTCCGGGTGACCTG 444 Query 22597 GTTGGAGACTTCTTTATGGGGTCTGGTGCCACCGGAAAAGCAGC-CTGGCGGCTTGGCCG 22655 |||| ||| ||||| |||||||| ||| | || | |||||||| |||| ||| || || Sbjct 443 GTTGCAGATTTCTTCATGGGGTCCGGTTCGACAGTCAAAGCAGCGATGGC-GCTGGGGCG 385 Query 22656 CTGCTTCATTGGTGTGGAGCTGGA 22679 | |||||||| |||||||| Sbjct 384 TCGTGCAATTGGTGTCGAGCTGGA 361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108625038818184