Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_009760.1 Length=218948 Score E Sequences producing significant alignments: (Bits) Value seq606 183 4e-41 >seq606 Length=32730 Score = 183 bits (202), Expect = 4e-41 Identities = 200/266 (75%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 164082 TTTACTGCTGTTTTCAACTCTTTACCAGCTTTGAATGCCGGTACTTTTGTTGCAGCAATT 164141 || ||||| ||| | | ||||||| | ||||||||| |||||||| |||| | |||| Sbjct 23511 TTAACTGCATCTTTTAGCGCTTTACCTGGTTTGAATGCAGGTACTTTGCTTGCTGGAATT 23452 Query 164142 TCAATTTCTTCACCAGTTTGTGGGTTACGTCCCTTACGAGCCGCACGGTCACGAGTTTCG 164201 || ||||||||||||||||||||||||||||| || || |||||||| ||||| ||| Sbjct 23451 TCGATTTCTTCACCAGTTTGTGGGTTACGTCCTTTGCGGGCCGCACGTTCACGTACTTCA 23392 Query 164202 AATGTACCAAAGCCGATTAACTGTACTTTGTTACCTTCTGCTAAAGCGTTTGTGATACCG 164261 || ||||||||||||| ||||| ||||| | |||||| ||||| |||| | |||| Sbjct 23391 AAGTTACCAAAGCCGATCAACTGAACTTTTTCACCTTCAGCTAATGCGTCTTGGATAGTT 23332 Query 164262 CCAAATACTGCGTCTACAGCTTTTGTAGCATCCTTTTTAGAGATTTCTGCTGTTTCAGCT 164321 |||||| || || ||||| |||||| || || |||| | || | | | | || Sbjct 23331 GAAAATACAGCATCGACAGCAGCTGTAGCGTCTTTCTTAGTTAAGTCAGTAGCTGCTGCA 23272 Query 164322 ACGTGGTTGATTAATTCAGTTTTGTT 164347 || | | ||| ||||| | |||||| Sbjct 23271 ACTTTTTCGATCAATTCTGCTTTGTT 23246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 700469208734080