Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_009810.1 Length=38867 Score E Sequences producing significant alignments: (Bits) Value seq729 120 8e-23 >seq729 Length=25020 Score = 120 bits (132), Expect = 8e-23 Identities = 211/302 (70%), Gaps = 4/302 (1%) Strand=Plus/Minus Query 35476 TGTAGTACTTGTAGGACGATTAACAAAAGACCCTGATTTACGATATACGCCAGCTGGTGC 35535 ||| ||||| || || || |||||||| || ||||||||||| || || || |||| | Sbjct 1314 TGTTGTACTAGTTGGTCGTTTAACAAAGGATCCTGATTTACGCTACACCGCAAATGGTAC 1255 Query 35536 AGCAGTTGCGACTTTTACTTTAGCTGTAAATCGCCCATTTAAAAATACACAAGGAGAA-C 35594 || ||||| || |||||||||||||| ||||| |||| ||| || | | ||| | Sbjct 1254 AGGTGTTGCCACGTTTACTTTAGCTGTGAATCGTAATTTTACGAAT-CAAAGCGGGAATC 1196 Query 35595 AAGAAGCAGATTTCATTAATTGTGTTGTTTGGCGTAAACCAGCGGAAAACGCAGCTAATT 35654 || || ||||| || |||||||| ||||||| ||| |||| |||| |||||||| Sbjct 1195 GCGAGGCGGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGAAACTTTAGCTAATT 1136 Query 35655 TCTTGAAAAAAGGAAGCATGGCAGGCGTTGATGGACGTGTTCAAACTCGTAATTATGAGG 35714 | ||||||| | ||| || ||| ||| | ||||| | |||||||| Sbjct 1135 ATGCGCGCAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACAAGAAATTATGAAA 1076 Query 35715 A-CAGCGACGGTAAACGCGTTTTCGTTACTGAGGTAGTTGCTGAAACAGTTCAATTCTTA 35773 | |||| | || |||| || | || || || || |||||||| | | ||||| || Sbjct 1075 ATCAGC-AAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGAATTTCCAATTATTG 1017 Query 35774 GA 35775 || Sbjct 1016 GA 1015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124246667813688