Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_009810.1
Length=38867
Score E
Sequences producing significant alignments: (Bits) Value
seq729 120 8e-23
>seq729
Length=25020
Score = 120 bits (132), Expect = 8e-23
Identities = 211/302 (70%), Gaps = 4/302 (1%)
Strand=Plus/Minus
Query 35476 TGTAGTACTTGTAGGACGATTAACAAAAGACCCTGATTTACGATATACGCCAGCTGGTGC 35535
||| ||||| || || || |||||||| || ||||||||||| || || || |||| |
Sbjct 1314 TGTTGTACTAGTTGGTCGTTTAACAAAGGATCCTGATTTACGCTACACCGCAAATGGTAC 1255
Query 35536 AGCAGTTGCGACTTTTACTTTAGCTGTAAATCGCCCATTTAAAAATACACAAGGAGAA-C 35594
|| ||||| || |||||||||||||| ||||| |||| ||| || | | ||| |
Sbjct 1254 AGGTGTTGCCACGTTTACTTTAGCTGTGAATCGTAATTTTACGAAT-CAAAGCGGGAATC 1196
Query 35595 AAGAAGCAGATTTCATTAATTGTGTTGTTTGGCGTAAACCAGCGGAAAACGCAGCTAATT 35654
|| || ||||| || |||||||| ||||||| ||| |||| |||| ||||||||
Sbjct 1195 GCGAGGCGGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGAAACTTTAGCTAATT 1136
Query 35655 TCTTGAAAAAAGGAAGCATGGCAGGCGTTGATGGACGTGTTCAAACTCGTAATTATGAGG 35714
| ||||||| | ||| || ||| ||| | ||||| | ||||||||
Sbjct 1135 ATGCGCGCAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACAAGAAATTATGAAA 1076
Query 35715 A-CAGCGACGGTAAACGCGTTTTCGTTACTGAGGTAGTTGCTGAAACAGTTCAATTCTTA 35773
| |||| | || |||| || | || || || || |||||||| | | ||||| ||
Sbjct 1075 ATCAGC-AAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGAATTTCCAATTATTG 1017
Query 35774 GA 35775
||
Sbjct 1016 GA 1015
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 124246667813688
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |