Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_009815.1 Length=38124 Score E Sequences producing significant alignments: (Bits) Value seq729 134 3e-27 >seq729 Length=25020 Score = 134 bits (148), Expect = 3e-27 Identities = 205/292 (70%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 34919 TGATGAATCGTGTAGTACTTGTAGGACGATTAACTAAAGACCCTGATTTACGTTACACTC 34978 |||| ||| ||| ||||| || || || ||||| || || ||||||||||| ||||| Sbjct 1324 TGATTAATAATGTTGTACTAGTTGGTCGTTTAACAAAGGATCCTGATTTACGCTACACCG 1265 Query 34979 CAGCCGGCGCGGCTGTTGCGACTTTTACGCTAGCAGTAAATCGTATGTTCACTAATCAAA 35038 || || | | |||||| || ||||| |||| || ||||||| || || ||||||| Sbjct 1264 CAAATGGTACAGGTGTTGCCACGTTTACTTTAGCTGTGAATCGTAATTTTACGAATCAAA 1205 Query 35039 ACGGAGAACGAGAAGCAGATTTCATTAATTGTGTTGTTTGGCGCAAACCAGCAGAAAACG 35098 ||| | || || || ||||| || |||||||| ||||||| ||| ||||||||| Sbjct 1204 GCGGGAATCGCGAGGCGGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGAAACTT 1145 Query 35099 TTGCTAATTTCTTGAAGAAAGGAAGCATGGCGGGCGTTGATGGACGTGTTCAAACTCGTA 35158 | ||||||| | ||||||| | || || ||| ||| | ||||| | | Sbjct 1144 TAGCTAATTATGCGCGCAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACAAGAA 1085 Query 35159 ATTATGAGGATAACGACGGTAAACGTGTTTTCGTTACTGAGGTAGTTGCTGA 35210 ||||||| || | | || ||||||| | || || || || |||||||| Sbjct 1084 ATTATGAAAATCAGCAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGA 1033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 121869185154192