Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_009821.1 Length=164270 Score E Sequences producing significant alignments: (Bits) Value seq732 102 9e-17 >seq732 Length=24842 Score = 102 bits (112), Expect = 9e-17 Identities = 297/449 (66%), Gaps = 20/449 (4%) Strand=Plus/Minus Query 35036 AGGGCAATACGCGGAAGATTCAGAGTCACAACACCTAAGTTATTACGTCCGTCTAATACT 35095 || ||||||||||| || ||||| | | || || | ||| ||||| || || | Sbjct 606 AGAGCAATACGCGGCAGGTTCAGGCTGATCACGCCGAGGTTGTTACGACCATCGTGGATC 547 Query 35096 TCTTCGCCTTTCTCATTATGCCACACACCCAGGAAGCTACGACAACCCATCGGGCTAACC 35155 | ||||| || ||||| | |||||| || |||||||| || || ||||||||| | Sbjct 546 TGCTCGCCGTTTTCATTTTCCCACACGCCGAGGAAGCTGCGGCAGCCCATCGGGGTTTTA 487 Query 35156 GGAACACTAGATCCAGTGAT----ACTACGGTTATTCTTCG--CAGAGATATAATCAGGG 35209 ||| || || |||| ||||| | || | | ||| ||||| | || Sbjct 486 --AAC----GAACCGGTGACTTTCACTACC--TGATCGTAGTTCAG-GATAT---CCGGA 439 Query 35210 GTAAGACGCTTACTAGAACATTCCAATGCAAGTTGCTTAATGTCGTAGTTCGGATCTTCC 35269 | ||||| || | || |||| || || || || ||||||||||||||||| | Sbjct 438 TACATGCGCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTCGGATCGCCT 379 Query 35270 GGGTTAAGGTTTAATCCTTCTTCTAAGAAC-ATCACCAGCTTAGGAAACACCGGAGTTAT 35328 ||| |||| | || || | || | | |||||| || || ||||||| |||| | Sbjct 378 TTTTTATGGTTCAGACCATC-GCGAATCGCAAACACCAGTTTCGGGAACACCGCAGTTTT 320 Query 35329 ACCATCTTTACCTAAACCTTTAGTTCGAACTTTCAGGATCGCTTTCTGAATCAGTTTTTC 35388 || | |||||| | ||| | || |||||| | || ||||||||| Sbjct 319 ACGGTTTTTACCGAGGCCTGCGATACGGTTACGCAGGATAGATTCCTGAATCAGGCGCGA 260 Query 35389 TTCCCAGCTAGTACCCATACCAAATGTTAAAGTCACAAAAGGCGTTTGACCGTTGGTGGA 35448 ||||||||| || |||| |||||| || || ||||| ||||| |||||||||| || Sbjct 259 TTCCCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGCGTCTGACCGTTGGCGGT 200 Query 35449 GAACAAAGTGTTGATTTCATATTCCAACG 35477 | || ||||| | ||| || |||| || Sbjct 199 GTGCAGGGTGTTTACTTCGTACTCCAGCG 171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 525508698404800