Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq223 98.7 2e-15 seq52 89.7 1e-12 >seq223 Length=82600 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/146 (75%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATT 288387 || || || ||||| || ||||| ||| ||||| ||||||||| ||||| || ||| Sbjct 43197 TTACCGGCAAAGATTAGTCGCTGCTGA---TCTGGAGGGATTCCTTCCTTATCTTGAATT 43253 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 |||| |||||||| || || | |||| || || ||||| ||||| || || || ||| Sbjct 43254 TTCGTCTTCACGTTATCAATGGTATCGGACGGCTCAACTTCCAGCGTAATAGTTTTGCCG 43313 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||||||||| Sbjct 43314 GTTAGCGTTTTCACAAATATCTGCAT 43339 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || ||||| || ||||||||| | || || |||||||| || || ||||| | Sbjct 42634 CCAGCAAAGATTAGTCGCTGTTGATCAGGCGGAATACCTTCTTTGTCTTGTATTTTAGTC 42693 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || ||||| |||| ||| | ||| ||||| ||||| || ||||| || || ||| Sbjct 42694 TTTACATTTTCAATAGTATCCGAAGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTTAGA 42753 Query 288454 GTCTTGACGAATATCTGCAT 288473 || || |||||||||||||| Sbjct 42754 GTTTTCACGAATATCTGCAT 42773 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 288329 GTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTT 288388 |||| ||||| || || | ||||| ||| |||||| || ||||| || ||||| | Sbjct 41493 GTTTACCTGCAAAAATTAATCGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATCT 41552 Query 288389 TCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGG 288448 |||| || || |||||||| | ||| | || ||||| | || || |||||||| | Sbjct 41553 TCGCCTTGACATTTTCTATGGTATCCGAAGGCTCCACTTCCAAAGTAATAGTCTTCCCTG 41612 Query 288449 TCAGAGTCTTGACGAATATCTGCATT 288474 |||| || || ||||||||||||||| Sbjct 41613 TCAGCGTTTTCACGAATATCTGCATT 41638 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || || | ||| |||||| | ||| || ||||| |||||||| ||||| ||| Sbjct 42068 CCAGCAAAAATTAAACGTTGTTGATCAGGTGGAATACCTTCCTTATCCTGAATTTTGGCT 42127 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||||||||| |||| || || || ||||| ||||| || || || ||||| | | Sbjct 42128 TTCACGTTTTCAATAGTGTCCGACGGCTCCACTTCCAGCGTTATTGTTTTTCCGGTTAAA 42187 Query 288454 GTCTTGACGAATATCTGCATT 288474 || || || || || |||||| Sbjct 42188 GTTTTCACAAAAATTTGCATT 42208 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 288330 TTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTT 288389 ||| ||||||||||| |||||||| || | ||| || |||||||| || || || || Sbjct 42915 TTTACCTGCGAAGATAAGACGCTGCTGGTCAGGTGGAATACCTTCTTTGTCTTGAATCTT 42974 Query 288390 CGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGT 288449 | || || || || || | || || |||||||| || ||||| ||||| || || Sbjct 42975 AGTCTTAACATTCTCAATGGTGTCTGACGGCTCTACTTCAAGAGTGATAGTCTTGCCCGT 43034 Query 288450 CAGAGTCTTGACGAATATCTGCATT 288474 || ||||||||||| || |||||| Sbjct 43035 CAATGTCTTGACGAAAATTTGCATT 43059 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || ||||||||||| ||| | || ||||||||||| ||||| || || || Sbjct 41216 CCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGTATCTTGGCC 41275 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 |||||||| || |||| || | || |||||||| || || || || || |||| Sbjct 41276 TTCACGTTATCGATAGTGTCCGAAGGCTCCACTTCGAGAGTTATAGTTTTGCCTGTCAAT 41335 Query 288454 GTCTTGACGAATATCTGCATT 288474 || ||||| ||||| |||||| Sbjct 41336 GTTTTGACAAATATTTGCATT 41356 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 ||||||||||| |||||||||||| || || ||||| ||||| || ||||| Sbjct 43777 CCTGCGAAGATTAGACGCTGTTGATCCGGAGGAATGCCTTCCTTATCTTGAATTTTATTC 43836 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| ||||| || || || || || ||||| ||||| || || || || || || Sbjct 43837 TTCACATTTTCAATTGAGTCAGACGGCTCAACTTCAAGCGTAATGGTTTTTCCCGTGAGC 43896 Query 288454 GTCTTGACGAATATCTGCATT 288474 || || ||||| ||||||||| Sbjct 43897 GTTTTCACGAAAATCTGCATT 43917 >seq52 Length=191592 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || ||||| ||||| || || |||||||||||||| || | || | | ||| ||| Sbjct 143556 ATACCCTCTTTGTCCTGTATCTTGGCTTTCACGTTTTCAATCGGGTCACATGGTTCCACT 143615 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| |||||||| ||||| ||||| ||||| |||||||| Sbjct 143616 TCCAAAGTGATTGTCTTCCCAGTCAGCGTCTTCACGAAGATCTGCAT 143662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179591584877768