Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq223 98.7 2e-15
seq52 89.7 1e-12
>seq223
Length=82600
Score = 98.7 bits (108), Expect = 2e-15
Identities = 110/146 (75%), Gaps = 6/146 (4%)
Strand=Plus/Plus
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATT 288387
|| || || ||||| || ||||| ||| ||||| ||||||||| ||||| || |||
Sbjct 43197 TTACCGGCAAAGATTAGTCGCTGCTGA---TCTGGAGGGATTCCTTCCTTATCTTGAATT 43253
Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447
|||| |||||||| || || | |||| || || ||||| ||||| || || || |||
Sbjct 43254 TTCGTCTTCACGTTATCAATGGTATCGGACGGCTCAACTTCCAGCGTAATAGTTTTGCCG 43313
Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || || || |||||||||||
Sbjct 43314 GTTAGCGTTTTCACAAATATCTGCAT 43339
Score = 95.1 bits (104), Expect = 3e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| || ||||| || ||||||||| | || || |||||||| || || ||||| |
Sbjct 42634 CCAGCAAAGATTAGTCGCTGTTGATCAGGCGGAATACCTTCTTTGTCTTGTATTTTAGTC 42693
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|| || ||||| |||| ||| | ||| ||||| ||||| || ||||| || || |||
Sbjct 42694 TTTACATTTTCAATAGTATCCGAAGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTTAGA 42753
Query 288454 GTCTTGACGAATATCTGCAT 288473
|| || ||||||||||||||
Sbjct 42754 GTTTTCACGAATATCTGCAT 42773
Score = 93.3 bits (102), Expect = 1e-13
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 288329 GTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTT 288388
|||| ||||| || || | ||||| ||| |||||| || ||||| || ||||| |
Sbjct 41493 GTTTACCTGCAAAAATTAATCGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATCT 41552
Query 288389 TCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGG 288448
|||| || || |||||||| | ||| | || ||||| | || || |||||||| |
Sbjct 41553 TCGCCTTGACATTTTCTATGGTATCCGAAGGCTCCACTTCCAAAGTAATAGTCTTCCCTG 41612
Query 288449 TCAGAGTCTTGACGAATATCTGCATT 288474
|||| || || |||||||||||||||
Sbjct 41613 TCAGCGTTTTCACGAATATCTGCATT 41638
Score = 93.3 bits (102), Expect = 1e-13
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| || || || | ||| |||||| | ||| || ||||| |||||||| ||||| |||
Sbjct 42068 CCAGCAAAAATTAAACGTTGTTGATCAGGTGGAATACCTTCCTTATCCTGAATTTTGGCT 42127
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
||||||||||| |||| || || || ||||| ||||| || || || ||||| | |
Sbjct 42128 TTCACGTTTTCAATAGTGTCCGACGGCTCCACTTCCAGCGTTATTGTTTTTCCGGTTAAA 42187
Query 288454 GTCTTGACGAATATCTGCATT 288474
|| || || || || ||||||
Sbjct 42188 GTTTTCACAAAAATTTGCATT 42208
Score = 91.5 bits (100), Expect = 3e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 288330 TTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTT 288389
||| ||||||||||| |||||||| || | ||| || |||||||| || || || ||
Sbjct 42915 TTTACCTGCGAAGATAAGACGCTGCTGGTCAGGTGGAATACCTTCTTTGTCTTGAATCTT 42974
Query 288390 CGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGT 288449
| || || || || || | || || |||||||| || ||||| ||||| || ||
Sbjct 42975 AGTCTTAACATTCTCAATGGTGTCTGACGGCTCTACTTCAAGAGTGATAGTCTTGCCCGT 43034
Query 288450 CAGAGTCTTGACGAATATCTGCATT 288474
|| ||||||||||| || ||||||
Sbjct 43035 CAATGTCTTGACGAAAATTTGCATT 43059
Score = 87.8 bits (96), Expect = 4e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| || || ||||||||||| ||| | || ||||||||||| ||||| || || ||
Sbjct 41216 CCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGTATCTTGGCC 41275
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|||||||| || |||| || | || |||||||| || || || || || ||||
Sbjct 41276 TTCACGTTATCGATAGTGTCCGAAGGCTCCACTTCGAGAGTTATAGTTTTGCCTGTCAAT 41335
Query 288454 GTCTTGACGAATATCTGCATT 288474
|| ||||| ||||| ||||||
Sbjct 41336 GTTTTGACAAATATTTGCATT 41356
Score = 87.8 bits (96), Expect = 4e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
||||||||||| |||||||||||| || || ||||| ||||| || |||||
Sbjct 43777 CCTGCGAAGATTAGACGCTGTTGATCCGGAGGAATGCCTTCCTTATCTTGAATTTTATTC 43836
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
||||| ||||| || || || || || ||||| ||||| || || || || || ||
Sbjct 43837 TTCACATTTTCAATTGAGTCAGACGGCTCAACTTCAAGCGTAATGGTTTTTCCCGTGAGC 43896
Query 288454 GTCTTGACGAATATCTGCATT 288474
|| || ||||| |||||||||
Sbjct 43897 GTTTTCACGAAAATCTGCATT 43917
>seq52
Length=191592
Score = 89.7 bits (98), Expect = 1e-12
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || ||||| ||||| || || |||||||||||||| || | || | | ||| |||
Sbjct 143556 ATACCCTCTTTGTCCTGTATCTTGGCTTTCACGTTTTCAATCGGGTCACATGGTTCCACT 143615
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| | ||||| |||||||| ||||| ||||| ||||| ||||||||
Sbjct 143616 TCCAAAGTGATTGTCTTCCCAGTCAGCGTCTTCACGAAGATCTGCAT 143662
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179591584877768
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |