Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq215 114 3e-20 >seq215 Length=85622 Score = 114 bits (126), Expect = 3e-20 Identities = 204/294 (69%), Gaps = 8/294 (3%) Strand=Plus/Plus Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496 ||||||||||||| |||||| || |||||| ||||| ||||| | | |||||| ||| Sbjct 40932 GTGAAAATATATCTTGCACTAGCAGCATCCTTGCCACCTTGCAAACGAGTACCGAATTGG 40991 Query 297497 CCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACG 297556 || | |||| || ||||| ||| ||||| || ||| | || || || | || | Sbjct 40992 CCAACAGGCAGCAGTAGGTTGACGTTGTTGCTGCCCACAAAGTCGTGCGCCAAATTTATA 41051 Query 297557 ATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCG 297616 || || || || ||||||||| || ||||| ||| | || ||||| ||||| Sbjct 41052 ATAGTTCCCATAAGGCTTGCTTCGCCGTGATGATAAGCGGAAGTTTCGGCAACTGAACCG 41111 Query 297617 CTGAACTGTGCAACCTTCAC--GTCGGTCGTCAAATTGCGCTTGAA--AGCTGAATATAT 297672 ||||| || || ||||| ||| | ||| || |||||||| | ||| | || Sbjct 41112 GCCAACTGAGCCACTTTCACTTCTCGCTTGTC--GTTACGCTTGAAGCAAGTGA--ACAT 41167 Query 297673 CACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTC 297726 ||||| | |||| ||| || |||||||| || | || || ||||||| ||| Sbjct 41168 TACTTTTCTTTGACCAGGCTTTAAACCATCGACTAAAGAAGGGATGCTTCTTTC 41221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102821273018600