Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq215 114 3e-20
>seq215
Length=85622
Score = 114 bits (126), Expect = 3e-20
Identities = 204/294 (69%), Gaps = 8/294 (3%)
Strand=Plus/Plus
Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496
||||||||||||| |||||| || |||||| ||||| ||||| | | |||||| |||
Sbjct 40932 GTGAAAATATATCTTGCACTAGCAGCATCCTTGCCACCTTGCAAACGAGTACCGAATTGG 40991
Query 297497 CCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACG 297556
|| | |||| || ||||| ||| ||||| || ||| | || || || | || |
Sbjct 40992 CCAACAGGCAGCAGTAGGTTGACGTTGTTGCTGCCCACAAAGTCGTGCGCCAAATTTATA 41051
Query 297557 ATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCG 297616
|| || || || ||||||||| || ||||| ||| | || ||||| |||||
Sbjct 41052 ATAGTTCCCATAAGGCTTGCTTCGCCGTGATGATAAGCGGAAGTTTCGGCAACTGAACCG 41111
Query 297617 CTGAACTGTGCAACCTTCAC--GTCGGTCGTCAAATTGCGCTTGAA--AGCTGAATATAT 297672
||||| || || ||||| ||| | ||| || |||||||| | ||| | ||
Sbjct 41112 GCCAACTGAGCCACTTTCACTTCTCGCTTGTC--GTTACGCTTGAAGCAAGTGA--ACAT 41167
Query 297673 CACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTC 297726
||||| | |||| ||| || |||||||| || | || || ||||||| |||
Sbjct 41168 TACTTTTCTTTGACCAGGCTTTAAACCATCGACTAAAGAAGGGATGCTTCTTTC 41221
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102821273018600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |