Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq199 84.2 3e-11 >seq199 Length=91904 Score = 84.2 bits (92), Expect = 3e-11 Identities = 180/267 (67%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 171881 GTGAAGATGTACCTCGTTTGAGACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGA 171940 ||||||||||| || | || || ||||| || || |||||||| || |||||| Sbjct 70061 GTGAAGATGTATCTAGGGCTAGCCGAGTCTTTCCCGCCTTGCAGACGCGTGCCGAATTGA 70002 Query 171941 CCACACGGTTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACA 172000 ||| || || || ||||||||||| || | ||| | ||||| |||||| Sbjct 70001 CCAATGGGCAACAGCAGGTTGATATTGTTGCTTCCGACAAAGTTGTGCGCCAAGTTGACA 69942 Query 172001 ATCGTATCC-GCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCGACATACGC 172059 |||||| || | || || |||| |||||||| |||| ||| | || || || | | Sbjct 69941 ATCGTAGCCATCAAGCTAG-CTTCGCCGTGATGATAGGAAGACATTTCGGCAACCGAACC 69883 Query 172060 CGCCAACTGTGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATGAC 172119 |||| ||| || ||||| | || |||| ||| | |||||| | ||||| || Sbjct 69882 GGCCAGCTGAGCAACCTTGACTTCTCGCTTGTCGTTTCGCTTGAAGCAGGTATACAAAAC 69823 Query 172120 CTTTCTCTGTGAAGGCTTGAGGCCGTC 172146 ||| | ||| |||||| | ||||| Sbjct 69822 CTTCCGCTGNCCAGGCTTCAAACCGTC 69796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597322567480480