Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_010237.1
Length=63395
Score E
Sequences producing significant alignments: (Bits) Value
seq974 320 7e-83
seq1066 288 4e-73
>seq974
Length=15858
Score = 320 bits (354), Expect = 7e-83
Identities = 560/810 (69%), Gaps = 4/810 (0%)
Strand=Plus/Minus
Query 138 TCAGGCATCCATGCACCATAAACATTGTAGACCATGCTGGCGCTGGAGTGCCCCATCTGT 197
|||| ||||||||| || || |||||| | ||||| ||| || | |||||||||||
Sbjct 809 TCAGTCATCCATGCTCCGTATACATTGAACACCATCTGGGCACTTGCATGCCCCATCTGG 750
Query 198 GATGCAATAAATGTCGGGTTTGCTCCGGAAGATAAAGCCCAGCACGCATAGGTATGGCGT 257
||||| || | ||||||||||||| |||||| | |||||||||||| || || |||
Sbjct 749 CTGGCAATGAAGCTTGGGTTTGCTCCGGCAGATAATGACCAGCACGCATAAGTGTGTCGT 690
Query 258 GACTGATACGCTTTACGGGATCGGATACCCGCTCTTTTTATTGCTGAATCCCATGTCGCT 317
||||| || ||||| ||| | ||| ||||| | || || |||| ||||||| |
Sbjct 689 GACTGGTATGCTTTCCGGTGCCTGATGCCCGCACGCTTAATGGCTGTTTCCCATGAGTCG 630
Query 318 CCGATGGAGCTTACCGCGTAGTTAATACCCGCCT-TGTGATTCTTGCGAACGATTTGCGG 376
|| ||||| |||| |||| ||| ||| ||| | || || || | ||| | || ||
Sbjct 629 CCAATGGAATCTACCTTGTAGATAAAACCTACCTGTTTGCTT-TTTCTAACCACCTGGGG 571
Query 377 ACAGAAAACAAAAGTGCACTCGTGCAAAATTGTTCTTCCGTACTCGCGTAATTGAACAGT 436
|| || ||||| || || || | || | ||| || || |||| |||||| |
Sbjct 570 GTTAAATACGAAAGTACATTCATGATTCACTGAACGTCCATATTCACGTAGTTGAACCTT 511
Query 437 GATCTGATGCTGCCTGCTAAGACGAGTAAGCATCGCCTGGTTTTTAAGTGCTTCAATTGC 496
||| || |||||| | | || | || | ||||| ||||| || | || ||
Sbjct 510 GATGTGGTGCTGCTTACCCAGTCTTGTCATTTCAGCCTGATTTTTCAGGACACTGATAGC 451
Query 497 TGGTGCCAGAAGATGTATAACCCGGTTAGTGCCTGCGTCGGTCTTTGGTAGCGTAAAATC 556
|| | |||||| | ||||| ||| || | ||| || || || ||||| || || ||
Sbjct 450 GGGCTGGATAAGATGCACAACCCTGTTTGTACTTGCTTCAGTTTTAGGTAGAGTGAACTC 391
Query 557 ACCTATTTTTGTAAAATTTCGTCGCACTGTTATCGTGCCAGCTTTCAGGTCGATATCCTC 616
||| | ||| ||| |||| || | | || || || || |||||||| |||||||| ||
Sbjct 390 ACCGAGTTTCGTATAATTGCGCCTGATAGTAATAGTTCCTGCTTTCAGATCGATATCTTC 331
Query 617 CCATGCAAGTGCGGCAATTTCACCGTGTCGCATCCCTGTAAAAACAGCCACTGTCCAGAG 676
||| || || | | | | ||||||||| ||||| ||||| | ||||||| || ||| ||
Sbjct 330 CCAGGCCAGGGAGACCAGTTCACCGTGACGCATTCCTGTGTACACAGCCAATGACCACAG 271
Query 677 GTTTTTGGTCTGTTGATGATGGCAGGCATCAATGAGACGGCTAAACTCATCTCTGGTCAG 736
|||||| ||||| ||||| |||| ||||| || || || |||| || || | || ||
Sbjct 270 GTTTTTCGTCTGCTGATGTCGGCAAGCATCTATCAGGCGAATAAATTCGTCACGAGTTAG 211
Query 737 TGGATCCGGCACTGGTTTTGATTTCCTCAGCGGTGTTATTGAATTAAACGGGTTTTTCTC 796
||||| ||| ||| | | | | | || || | ||| | || || ||| ||
Sbjct 210 CGGATCTGGCTCTGCCCTGGCTCTTTTAAGAGGCTTAATTCCCTGGAAGGGATTTGCTTC 151
Query 797 CAGATACCCGTTTTCGGCGGCAAAGCTG-AACATTCCGGCTGTTGTTGTCATGTAATAGT 855
| || |||| || || ||||| ||| |||||||| || |||| ||||||||||| |
Sbjct 150 TAAGTAACCGTGATCTGCAGCAAA-CTGAAACATTCCAGCGATTGTCGTCATGTAATAAT 92
Query 856 TCACTGTGGGTACGGTTCTTCCTTTTCGGGACGTGCTGGTTTTCCTGCTTCCCTTTTCCC 915
| || || ||| | | ||||||| | | || ||||| | || | ||
Sbjct 91 TTACAGTAACGACGCTCCGTCCTTTTGCTGCTGCTTTGTTTTTCGTTGAATTCTGATACC 32
Query 916 CGGTCAGTAAATCTTTCCTGATAAACAGCA 945
||||||| ||||||||||||||| ||||||
Sbjct 31 CGGTCAGCAAATCTTTCCTGATATACAGCA 2
>seq1066
Length=13853
Score = 288 bits (318), Expect = 4e-73
Identities = 221/262 (84%), Gaps = 0/262 (0%)
Strand=Plus/Minus
Query 20471 ATGACAAGCATTGAAATCGCTGAGTTGGTGGGAAGCCAACACGGTAATGTCAGAATATCA 20530
||||| ||| |||||||||| ||| |||| ||||| |||||||| |||||||||||||||
Sbjct 9942 ATGACCAGCGTTGAAATCGCAGAGCTGGTTGGAAGTCAACACGGCAATGTCAGAATATCA 9883
Query 20531 ATAGAACGTCTGGCAAAGCGTGGGGTGATTCAACTTCCTTCAATGCAAAAAGTTGAAAAT 20590
||||| ||||||||||| || |||||||||||||||||| |||||||||||||||| ||
Sbjct 9882 ATAGAGCGTCTGGCAAAACGCGGGGTGATTCAACTTCCTGCAATGCAAAAAGTTGAGAAC 9823
Query 20591 AAACAAACAATTAGCCCTAACAAATTCACAAGCGTGTATATATTCGAAGGCGAACAAGGT 20650
||||| || |||||| ||||||||||||| || ||||| |||||||||||||||||
Sbjct 9822 GAACAATCATTTAGCCAAAACAAATTCACAAACGCATATATTTTCGAAGGCGAACAAGGC 9763
Query 20651 GAGCGAGACAGCATTATTGTCGTCGCTCAGTTGTCGCCGGAATTCACCGCTCGCCTTGTT 20710
| || |||||||| ||||||||||| || | | ||||||||||| || ||||| ||
Sbjct 9762 AAACGCGACAGCATCATTGTCGTCGCACAACTTTGCCCGGAATTCACTGCCCGCCTGGTA 9703
Query 20711 GACCGCTGGCGAGAACTCGAAG 20732
|| || ||||| ||||| ||||
Sbjct 9702 GATCGTTGGCGCGAACTGGAAG 9681
Score = 284 bits (314), Expect = 5e-72
Identities = 250/313 (80%), Gaps = 8/313 (3%)
Strand=Plus/Minus
Query 22674 GTCAAAGCAGCAATGGCGCTAGGGCGTCGTGCAATTGGCGTTGAGCTGGAGAGCGGGCGT 22733
||||||||||| |||||||| ||||||||||||||||| || ||||||||| | |||
Sbjct 410 GTCAAAGCAGCGATGGCGCTGGGGCGTCGTGCAATTGGTGTCGAGCTGGAGGCTGAACGT 351
Query 22734 TTTGAGCAGACGGTCAGGGAAGTTCAGAATGTAGTCAGTCAGAACGGATGATATTGCAGG 22793
||||||||||| | || || || |||||| | |||| ||| | ||||||||| |
Sbjct 350 TTTGAGCAGACCGCAAGAGATGTACAGAATTCAATCAGAAAGAGAGAGTGATATTGCTGA 291
Query 22794 ATTAGTTACGTACCGTTATTATCCTGCGCCCGGCCCTTTAGCTCAGTGGTGAGAGCGAGC 22853
||| || ||| |||||| || || ||||||||||||||||||||||||||||||
Sbjct 290 ATTTATTCTGTAACGTTATCATTATGTTATCGGCCCTTTAGCTCAGTGGTGAGAGCGAGC 231
Query 22854 GACTCATAATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCATATCACATACCGC 22913
||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
Sbjct 230 GACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA--------ACCAC 179
Query 22914 CATTAGCTCATCGGGACAGAGCGCCAGCCTTCGAAGCTGGCTGCGCGGGGTTCGAGTCCT 22973
|| ||||||||| ||| ||||| || ||||| ||| || | | ||| ||||||||||||
Sbjct 178 CACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTGCGAGGTTCGAGTCCT 119
Query 22974 CGATGGCGGTCCA 22986
|| ||| || |||
Sbjct 118 CGGTGGTGGGCCA 106
Score = 114 bits (126), Expect = 5e-21
Identities = 116/151 (77%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 21946 CTGATGCGTGATATCCGGCAGGTTCTTGAGCGCTGGGGGGCATGGGCGGCAAATAACTAT 22005
|||||||||||||| | ||||||||| || ||||||||||||| ||||||||| |
Sbjct 3056 CTGATGCGTGATATTCAAATGGTTCTTGAACGTTGGGGGGCATGGGTGGCAAATAATCAC 2997
Query 22006 GAGGATGTTACATGGTCGCCCATTGCTGCCGGATTTAAGGGACTGATCCCCGAAAAAGTA 22065
|||||||| |||||| | ||||||| || ||||||||| | ||||| ||||||
Sbjct 2996 GAGGATGTGGAATGGTCATCTGTTGCTGCAGGTTTTAAGGGATTAATCCCTTCGAAAGTA 2937
Query 22066 AAATCACGTCCACAGTGCTGTGACGATGATG 22096
||||| || || || || | || || ||||
Sbjct 2936 AAATCCCGCCCGCAATGTAGCGATGACGATG 2906
Score = 82.4 bits (90), Expect = 3e-11
Identities = 151/207 (73%), Gaps = 16/207 (8%)
Strand=Plus/Minus
Query 19456 AAATCTGGCGTCGGGATTAGCACCCCGGATATCGAA-ACGGTGCATA-AC--CGCGCTGG 19511
||| | || | ||||||| |||||||||| || || | || | ||| || ||||| |
Sbjct 8281 AAAACGGGTGCCGGGATTTGCACCCCGGA-ATTGATCAAGGCG-ATATACGACGCGCCAG 8224
Query 19512 CGG-TTTTTTATGCGCTAAGCACAGTCACATTCGCGATTTATGGCGGGCTGTGTGGGGGG 19570
|| |||||||| | | || || ||| | || |||||| |||||| | ||||
Sbjct 8223 CGTCTTTTTTATCGTCCACGCTCACGCACG--CCAGAATTATGGTGGGCTGGGCAGGGG- 8167
Query 19571 AGCCGAAAGGCTCGCCGGATGTTTCGA---CCGGTAGTGCTAACCCCGCACAGTTCGCCA 19627
|||||||||||||||||| | | || |||||||||| ||||| | |||| |||||
Sbjct 8166 AGCCGAAAGGCTCGCCGGTTTCCTTGATCGCCGGTAGTGCAAACCCTGTTCAGTCCGCCA 8107
Query 19628 CCA-CGATGATTAGCACCTGACGGTGG 19653
||| ||| |||| |||||| ||||||
Sbjct 8106 CCAGCGA-GATTTGCACCT-CCGGTGG 8082
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 202728931006096
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |