Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_010237.1 Length=63395 Score E Sequences producing significant alignments: (Bits) Value seq974 320 7e-83 seq1066 288 4e-73 >seq974 Length=15858 Score = 320 bits (354), Expect = 7e-83 Identities = 560/810 (69%), Gaps = 4/810 (0%) Strand=Plus/Minus Query 138 TCAGGCATCCATGCACCATAAACATTGTAGACCATGCTGGCGCTGGAGTGCCCCATCTGT 197 |||| ||||||||| || || |||||| | ||||| ||| || | ||||||||||| Sbjct 809 TCAGTCATCCATGCTCCGTATACATTGAACACCATCTGGGCACTTGCATGCCCCATCTGG 750 Query 198 GATGCAATAAATGTCGGGTTTGCTCCGGAAGATAAAGCCCAGCACGCATAGGTATGGCGT 257 ||||| || | ||||||||||||| |||||| | |||||||||||| || || ||| Sbjct 749 CTGGCAATGAAGCTTGGGTTTGCTCCGGCAGATAATGACCAGCACGCATAAGTGTGTCGT 690 Query 258 GACTGATACGCTTTACGGGATCGGATACCCGCTCTTTTTATTGCTGAATCCCATGTCGCT 317 ||||| || ||||| ||| | ||| ||||| | || || |||| ||||||| | Sbjct 689 GACTGGTATGCTTTCCGGTGCCTGATGCCCGCACGCTTAATGGCTGTTTCCCATGAGTCG 630 Query 318 CCGATGGAGCTTACCGCGTAGTTAATACCCGCCT-TGTGATTCTTGCGAACGATTTGCGG 376 || ||||| |||| |||| ||| ||| ||| | || || || | ||| | || || Sbjct 629 CCAATGGAATCTACCTTGTAGATAAAACCTACCTGTTTGCTT-TTTCTAACCACCTGGGG 571 Query 377 ACAGAAAACAAAAGTGCACTCGTGCAAAATTGTTCTTCCGTACTCGCGTAATTGAACAGT 436 || || ||||| || || || | || | ||| || || |||| |||||| | Sbjct 570 GTTAAATACGAAAGTACATTCATGATTCACTGAACGTCCATATTCACGTAGTTGAACCTT 511 Query 437 GATCTGATGCTGCCTGCTAAGACGAGTAAGCATCGCCTGGTTTTTAAGTGCTTCAATTGC 496 ||| || |||||| | | || | || | ||||| ||||| || | || || Sbjct 510 GATGTGGTGCTGCTTACCCAGTCTTGTCATTTCAGCCTGATTTTTCAGGACACTGATAGC 451 Query 497 TGGTGCCAGAAGATGTATAACCCGGTTAGTGCCTGCGTCGGTCTTTGGTAGCGTAAAATC 556 || | |||||| | ||||| ||| || | ||| || || || ||||| || || || Sbjct 450 GGGCTGGATAAGATGCACAACCCTGTTTGTACTTGCTTCAGTTTTAGGTAGAGTGAACTC 391 Query 557 ACCTATTTTTGTAAAATTTCGTCGCACTGTTATCGTGCCAGCTTTCAGGTCGATATCCTC 616 ||| | ||| ||| |||| || | | || || || || |||||||| |||||||| || Sbjct 390 ACCGAGTTTCGTATAATTGCGCCTGATAGTAATAGTTCCTGCTTTCAGATCGATATCTTC 331 Query 617 CCATGCAAGTGCGGCAATTTCACCGTGTCGCATCCCTGTAAAAACAGCCACTGTCCAGAG 676 ||| || || | | | | ||||||||| ||||| ||||| | ||||||| || ||| || Sbjct 330 CCAGGCCAGGGAGACCAGTTCACCGTGACGCATTCCTGTGTACACAGCCAATGACCACAG 271 Query 677 GTTTTTGGTCTGTTGATGATGGCAGGCATCAATGAGACGGCTAAACTCATCTCTGGTCAG 736 |||||| ||||| ||||| |||| ||||| || || || |||| || || | || || Sbjct 270 GTTTTTCGTCTGCTGATGTCGGCAAGCATCTATCAGGCGAATAAATTCGTCACGAGTTAG 211 Query 737 TGGATCCGGCACTGGTTTTGATTTCCTCAGCGGTGTTATTGAATTAAACGGGTTTTTCTC 796 ||||| ||| ||| | | | | | || || | ||| | || || ||| || Sbjct 210 CGGATCTGGCTCTGCCCTGGCTCTTTTAAGAGGCTTAATTCCCTGGAAGGGATTTGCTTC 151 Query 797 CAGATACCCGTTTTCGGCGGCAAAGCTG-AACATTCCGGCTGTTGTTGTCATGTAATAGT 855 | || |||| || || ||||| ||| |||||||| || |||| ||||||||||| | Sbjct 150 TAAGTAACCGTGATCTGCAGCAAA-CTGAAACATTCCAGCGATTGTCGTCATGTAATAAT 92 Query 856 TCACTGTGGGTACGGTTCTTCCTTTTCGGGACGTGCTGGTTTTCCTGCTTCCCTTTTCCC 915 | || || ||| | | ||||||| | | || ||||| | || | || Sbjct 91 TTACAGTAACGACGCTCCGTCCTTTTGCTGCTGCTTTGTTTTTCGTTGAATTCTGATACC 32 Query 916 CGGTCAGTAAATCTTTCCTGATAAACAGCA 945 ||||||| ||||||||||||||| |||||| Sbjct 31 CGGTCAGCAAATCTTTCCTGATATACAGCA 2 >seq1066 Length=13853 Score = 288 bits (318), Expect = 4e-73 Identities = 221/262 (84%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 20471 ATGACAAGCATTGAAATCGCTGAGTTGGTGGGAAGCCAACACGGTAATGTCAGAATATCA 20530 ||||| ||| |||||||||| ||| |||| ||||| |||||||| ||||||||||||||| Sbjct 9942 ATGACCAGCGTTGAAATCGCAGAGCTGGTTGGAAGTCAACACGGCAATGTCAGAATATCA 9883 Query 20531 ATAGAACGTCTGGCAAAGCGTGGGGTGATTCAACTTCCTTCAATGCAAAAAGTTGAAAAT 20590 ||||| ||||||||||| || |||||||||||||||||| |||||||||||||||| || Sbjct 9882 ATAGAGCGTCTGGCAAAACGCGGGGTGATTCAACTTCCTGCAATGCAAAAAGTTGAGAAC 9823 Query 20591 AAACAAACAATTAGCCCTAACAAATTCACAAGCGTGTATATATTCGAAGGCGAACAAGGT 20650 ||||| || |||||| ||||||||||||| || ||||| ||||||||||||||||| Sbjct 9822 GAACAATCATTTAGCCAAAACAAATTCACAAACGCATATATTTTCGAAGGCGAACAAGGC 9763 Query 20651 GAGCGAGACAGCATTATTGTCGTCGCTCAGTTGTCGCCGGAATTCACCGCTCGCCTTGTT 20710 | || |||||||| ||||||||||| || | | ||||||||||| || ||||| || Sbjct 9762 AAACGCGACAGCATCATTGTCGTCGCACAACTTTGCCCGGAATTCACTGCCCGCCTGGTA 9703 Query 20711 GACCGCTGGCGAGAACTCGAAG 20732 || || ||||| ||||| |||| Sbjct 9702 GATCGTTGGCGCGAACTGGAAG 9681 Score = 284 bits (314), Expect = 5e-72 Identities = 250/313 (80%), Gaps = 8/313 (3%) Strand=Plus/Minus Query 22674 GTCAAAGCAGCAATGGCGCTAGGGCGTCGTGCAATTGGCGTTGAGCTGGAGAGCGGGCGT 22733 ||||||||||| |||||||| ||||||||||||||||| || ||||||||| | ||| Sbjct 410 GTCAAAGCAGCGATGGCGCTGGGGCGTCGTGCAATTGGTGTCGAGCTGGAGGCTGAACGT 351 Query 22734 TTTGAGCAGACGGTCAGGGAAGTTCAGAATGTAGTCAGTCAGAACGGATGATATTGCAGG 22793 ||||||||||| | || || || |||||| | |||| ||| | ||||||||| | Sbjct 350 TTTGAGCAGACCGCAAGAGATGTACAGAATTCAATCAGAAAGAGAGAGTGATATTGCTGA 291 Query 22794 ATTAGTTACGTACCGTTATTATCCTGCGCCCGGCCCTTTAGCTCAGTGGTGAGAGCGAGC 22853 ||| || ||| |||||| || || |||||||||||||||||||||||||||||| Sbjct 290 ATTTATTCTGTAACGTTATCATTATGTTATCGGCCCTTTAGCTCAGTGGTGAGAGCGAGC 231 Query 22854 GACTCATAATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCATATCACATACCGC 22913 ||||||||||||||||||||||||||||| ||||||||||||||||| ||| | Sbjct 230 GACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA--------ACCAC 179 Query 22914 CATTAGCTCATCGGGACAGAGCGCCAGCCTTCGAAGCTGGCTGCGCGGGGTTCGAGTCCT 22973 || ||||||||| ||| ||||| || ||||| ||| || | | ||| |||||||||||| Sbjct 178 CACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTGCGAGGTTCGAGTCCT 119 Query 22974 CGATGGCGGTCCA 22986 || ||| || ||| Sbjct 118 CGGTGGTGGGCCA 106 Score = 114 bits (126), Expect = 5e-21 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 21946 CTGATGCGTGATATCCGGCAGGTTCTTGAGCGCTGGGGGGCATGGGCGGCAAATAACTAT 22005 |||||||||||||| | ||||||||| || ||||||||||||| ||||||||| | Sbjct 3056 CTGATGCGTGATATTCAAATGGTTCTTGAACGTTGGGGGGCATGGGTGGCAAATAATCAC 2997 Query 22006 GAGGATGTTACATGGTCGCCCATTGCTGCCGGATTTAAGGGACTGATCCCCGAAAAAGTA 22065 |||||||| |||||| | ||||||| || ||||||||| | ||||| |||||| Sbjct 2996 GAGGATGTGGAATGGTCATCTGTTGCTGCAGGTTTTAAGGGATTAATCCCTTCGAAAGTA 2937 Query 22066 AAATCACGTCCACAGTGCTGTGACGATGATG 22096 ||||| || || || || | || || |||| Sbjct 2936 AAATCCCGCCCGCAATGTAGCGATGACGATG 2906 Score = 82.4 bits (90), Expect = 3e-11 Identities = 151/207 (73%), Gaps = 16/207 (8%) Strand=Plus/Minus Query 19456 AAATCTGGCGTCGGGATTAGCACCCCGGATATCGAA-ACGGTGCATA-AC--CGCGCTGG 19511 ||| | || | ||||||| |||||||||| || || | || | ||| || ||||| | Sbjct 8281 AAAACGGGTGCCGGGATTTGCACCCCGGA-ATTGATCAAGGCG-ATATACGACGCGCCAG 8224 Query 19512 CGG-TTTTTTATGCGCTAAGCACAGTCACATTCGCGATTTATGGCGGGCTGTGTGGGGGG 19570 || |||||||| | | || || ||| | || |||||| |||||| | |||| Sbjct 8223 CGTCTTTTTTATCGTCCACGCTCACGCACG--CCAGAATTATGGTGGGCTGGGCAGGGG- 8167 Query 19571 AGCCGAAAGGCTCGCCGGATGTTTCGA---CCGGTAGTGCTAACCCCGCACAGTTCGCCA 19627 |||||||||||||||||| | | || |||||||||| ||||| | |||| ||||| Sbjct 8166 AGCCGAAAGGCTCGCCGGTTTCCTTGATCGCCGGTAGTGCAAACCCTGTTCAGTCCGCCA 8107 Query 19628 CCA-CGATGATTAGCACCTGACGGTGG 19653 ||| ||| |||| |||||| |||||| Sbjct 8106 CCAGCGA-GATTTGCACCT-CCGGTGG 8082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 202728931006096