Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq20 105 7e-18 seq69 102 9e-17 seq3004 100 3e-16 seq367 100 3e-16 seq2384 98.7 1e-15 seq1622 98.7 1e-15 seq314 98.7 1e-15 seq248 98.7 1e-15 seq85 98.7 1e-15 seq2273 96.9 4e-15 seq1889 96.9 4e-15 seq1452 96.9 4e-15 seq211 96.9 4e-15 >seq20 Length=252424 Score = 105 bits (116), Expect = 7e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 ||| |||||||| |||| | |||||||||| |||| |||||||||||||||| ||||| Sbjct 113464 AAATTTTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACT 113523 Query 57059 CACCACTATACTACCGAGGAT 57079 ||||||||||||||||||||| Sbjct 113524 CACCACTATACTACCGAGGAT 113544 >seq69 Length=173048 Score = 102 bits (112), Expect = 9e-17 Identities = 81/96 (84%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 57001 AATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 57060 || ||||||| |||| | |||||||||| |||| |||||||||||||||| ||||||| Sbjct 154915 AACTTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCA 154856 Query 57061 CCACTATACTACCGAGGA-TTGAATATATAACTTGA 57095 |||||||||||||||||| | | | | |||||| || Sbjct 154855 CCACTATACTACCGAGGAGTGGTAGAAATAACTGGA 154820 >seq3004 Length=1818 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| |||| | |||||||||| |||| |||||||||||||||| |||||||||| Sbjct 1585 TTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCA 1526 Query 57064 CTATACTACCGAGGA 57078 ||||||||||||||| Sbjct 1525 CTATACTACCGAGGA 1511 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061 ||| ||||| |||| | |||||||||| |||| |||||||||||||||| |||||| | Sbjct 775 ATTGTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCGC 716 Query 57062 CACTATACTACCGAGGA 57078 ||||||||||||||||| Sbjct 715 CACTATACTACCGAGGA 699 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||| |||||||||||||||| |||||||||| || Sbjct 244 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCAATA 303 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 304 TACTACCGAGGA 315 >seq367 Length=53538 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| |||| | |||||||||| |||| |||||||||||||||| |||||||||| Sbjct 1903 TTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCA 1844 Query 57064 CTATACTACCGAGGA 57078 ||||||||||||||| Sbjct 1843 CTATACTACCGAGGA 1829 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| |||| | |||||||||| |||| |||||||||||||||| |||||||||||| Sbjct 233 TCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACT 292 Query 57066 ATACTACCGAGGA 57078 ||||||||||||| Sbjct 293 ATACTACCGAGGA 305 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| |||| | |||||||||| |||| |||||||||||||||| |||||||||||| Sbjct 8412 TCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACT 8471 Query 57066 ATACTACCGAGGA 57078 ||||||||||||| Sbjct 8472 ATACTACCGAGGA 8484 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061 ||| ||||| |||| | |||||||||| |||| |||||||||||||||| |||||| | Sbjct 765 ATTGTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCGC 706 Query 57062 CACTATACTACCGAGGA 57078 ||||||||||||||||| Sbjct 705 CACTATACTACCGAGGA 689 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 7330 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 7389 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 7390 TACTACCGAGGA 7401 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| |||| | |||||||||| |||| |||||||||||||||| |||||||||| Sbjct 8200 TTGCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCA 8141 Query 57064 CTATACTACCGAGGA 57078 ||||||||||||||| Sbjct 8140 CTATACTACCGAGGA 8126 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 8844 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 8903 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 8904 TACTACCGAGGA 8915 >seq2384 Length=3046 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| |||| | |||||||||| |||| |||||||||||||||| ||||||||||| Sbjct 867 TTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCAC 808 Query 57065 TATACTACCGAGGA 57078 |||||||||||||| Sbjct 807 TATACTACCGAGGA 794 >seq1622 Length=6696 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| |||| | |||||||||| |||| |||||||||||||||| |||||||||| Sbjct 5941 TTGCTCCGCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCA 5882 Query 57064 CTATACTACCGAGGATT 57080 ||||||||||||||||| Sbjct 5881 CTATACTACCGAGGATT 5865 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 ||| |||| |||| | |||||||||| |||| |||||||||||||||| ||||||||| Sbjct 6158 TTTCCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACC 6217 Query 57063 ACTATACTACCGAGGA 57078 |||||||||||||||| Sbjct 6218 ACTATACTACCGAGGA 6233 >seq314 Length=61125 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| |||| | |||||||||| |||| |||||||||||||||| ||||||||||| Sbjct 13979 TTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCAC 14038 Query 57065 TATACTACCGAGGATTG 57081 |||||||||||||| || Sbjct 14039 TATACTACCGAGGACTG 14055 >seq248 Length=74676 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/83 (87%), Gaps = 3/83 (4%) Strand=Plus/Plus Query 56999 AAAATT---TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 |||||| |||||| |||| | |||||||||| |||| |||||||||||||||| || Sbjct 7435 AAAATTACATTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAAT 7494 Query 57056 ACTCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||||| Sbjct 7495 ACTCACCACTATACTACCGAGGA 7517 >seq85 Length=158702 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/86 (86%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 56994 TATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 57053 || ||||||| |||| |||| | |||||||||| |||| |||||||||||||||| Sbjct 1769 TAGGAAAAATC--CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGA 1826 Query 57054 ATACTCACCACTATACTACCGAGGAT 57079 |||||||||||||||||||||||||| Sbjct 1827 ATACTCACCACTATACTACCGAGGAT 1852 >seq2273 Length=3399 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| |||| | |||||||||| |||| |||||||||||||||| |||||||||||| Sbjct 2891 TCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACT 2832 Query 57066 ATACTACCGAGGATTG 57081 ||||||||||||| || Sbjct 2831 ATACTACCGAGGACTG 2816 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 3102 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 3161 Query 57067 TACTACCGAGGATTG 57081 |||||||||||| || Sbjct 3162 TACTACCGAGGACTG 3176 >seq1889 Length=4748 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| |||| | |||||||||| |||| |||||||||||||||| |||| Sbjct 2157 AAAAAGGTCCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATAC 2216 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 2217 TCACCACTATACTACCGAGGA 2237 >seq1452 Length=8395 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| |||| | |||||||||| |||| |||||||||||||||| |||| Sbjct 4651 AAAAAGGTCCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATAC 4592 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 4591 TCACCACTATACTACCGAGGA 4571 >seq211 Length=86670 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| |||| | |||||||||| |||| |||||||||||||||| |||| Sbjct 2063 AAAAAGGTCCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATAC 2004 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 2003 TCACCACTATACTACCGAGGA 1983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543184580095040