Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq20 105 7e-18
seq69 102 9e-17
seq3004 100 3e-16
seq367 100 3e-16
seq2384 98.7 1e-15
seq1622 98.7 1e-15
seq314 98.7 1e-15
seq248 98.7 1e-15
seq85 98.7 1e-15
seq2273 96.9 4e-15
seq1889 96.9 4e-15
seq1452 96.9 4e-15
seq211 96.9 4e-15
>seq20
Length=252424
Score = 105 bits (116), Expect = 7e-18
Identities = 72/81 (89%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058
||| |||||||| |||| | |||||||||| |||| |||||||||||||||| |||||
Sbjct 113464 AAATTTTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACT 113523
Query 57059 CACCACTATACTACCGAGGAT 57079
|||||||||||||||||||||
Sbjct 113524 CACCACTATACTACCGAGGAT 113544
>seq69
Length=173048
Score = 102 bits (112), Expect = 9e-17
Identities = 81/96 (84%), Gaps = 1/96 (1%)
Strand=Plus/Minus
Query 57001 AATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 57060
|| ||||||| |||| | |||||||||| |||| |||||||||||||||| |||||||
Sbjct 154915 AACTTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCA 154856
Query 57061 CCACTATACTACCGAGGA-TTGAATATATAACTTGA 57095
|||||||||||||||||| | | | | |||||| ||
Sbjct 154855 CCACTATACTACCGAGGAGTGGTAGAAATAACTGGA 154820
>seq3004
Length=1818
Score = 100 bits (110), Expect = 3e-16
Identities = 67/75 (89%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063
||||||| |||| | |||||||||| |||| |||||||||||||||| ||||||||||
Sbjct 1585 TTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCA 1526
Query 57064 CTATACTACCGAGGA 57078
|||||||||||||||
Sbjct 1525 CTATACTACCGAGGA 1511
Score = 95.1 bits (104), Expect = 1e-14
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061
||| ||||| |||| | |||||||||| |||| |||||||||||||||| |||||| |
Sbjct 775 ATTGTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCGC 716
Query 57062 CACTATACTACCGAGGA 57078
|||||||||||||||||
Sbjct 715 CACTATACTACCGAGGA 699
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| |||| | |||||||||| |||| |||||||||||||||| |||||||||| ||
Sbjct 244 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCAATA 303
Query 57067 TACTACCGAGGA 57078
||||||||||||
Sbjct 304 TACTACCGAGGA 315
>seq367
Length=53538
Score = 100 bits (110), Expect = 3e-16
Identities = 67/75 (89%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063
||||||| |||| | |||||||||| |||| |||||||||||||||| ||||||||||
Sbjct 1903 TTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCA 1844
Query 57064 CTATACTACCGAGGA 57078
|||||||||||||||
Sbjct 1843 CTATACTACCGAGGA 1829
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| |||| | |||||||||| |||| |||||||||||||||| ||||||||||||
Sbjct 233 TCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACT 292
Query 57066 ATACTACCGAGGA 57078
|||||||||||||
Sbjct 293 ATACTACCGAGGA 305
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| |||| | |||||||||| |||| |||||||||||||||| ||||||||||||
Sbjct 8412 TCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACT 8471
Query 57066 ATACTACCGAGGA 57078
|||||||||||||
Sbjct 8472 ATACTACCGAGGA 8484
Score = 95.1 bits (104), Expect = 1e-14
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061
||| ||||| |||| | |||||||||| |||| |||||||||||||||| |||||| |
Sbjct 765 ATTGTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCGC 706
Query 57062 CACTATACTACCGAGGA 57078
|||||||||||||||||
Sbjct 705 CACTATACTACCGAGGA 689
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| |||| | |||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 7330 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 7389
Query 57067 TACTACCGAGGA 57078
||||||||||||
Sbjct 7390 TACTACCGAGGA 7401
Score = 95.1 bits (104), Expect = 1e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063
|| |||| |||| | |||||||||| |||| |||||||||||||||| ||||||||||
Sbjct 8200 TTGCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCA 8141
Query 57064 CTATACTACCGAGGA 57078
|||||||||||||||
Sbjct 8140 CTATACTACCGAGGA 8126
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| |||| | |||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 8844 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 8903
Query 57067 TACTACCGAGGA 57078
||||||||||||
Sbjct 8904 TACTACCGAGGA 8915
>seq2384
Length=3046
Score = 98.7 bits (108), Expect = 1e-15
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064
|||||| |||| | |||||||||| |||| |||||||||||||||| |||||||||||
Sbjct 867 TTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCAC 808
Query 57065 TATACTACCGAGGA 57078
||||||||||||||
Sbjct 807 TATACTACCGAGGA 794
>seq1622
Length=6696
Score = 98.7 bits (108), Expect = 1e-15
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063
|| |||| |||| | |||||||||| |||| |||||||||||||||| ||||||||||
Sbjct 5941 TTGCTCCGCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCA 5882
Query 57064 CTATACTACCGAGGATT 57080
|||||||||||||||||
Sbjct 5881 CTATACTACCGAGGATT 5865
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062
||| |||| |||| | |||||||||| |||| |||||||||||||||| |||||||||
Sbjct 6158 TTTCCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACC 6217
Query 57063 ACTATACTACCGAGGA 57078
||||||||||||||||
Sbjct 6218 ACTATACTACCGAGGA 6233
>seq314
Length=61125
Score = 98.7 bits (108), Expect = 1e-15
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064
|||||| |||| | |||||||||| |||| |||||||||||||||| |||||||||||
Sbjct 13979 TTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCAC 14038
Query 57065 TATACTACCGAGGATTG 57081
|||||||||||||| ||
Sbjct 14039 TATACTACCGAGGACTG 14055
>seq248
Length=74676
Score = 98.7 bits (108), Expect = 1e-15
Identities = 72/83 (87%), Gaps = 3/83 (4%)
Strand=Plus/Plus
Query 56999 AAAATT---TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055
|||||| |||||| |||| | |||||||||| |||| |||||||||||||||| ||
Sbjct 7435 AAAATTACATTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAAT 7494
Query 57056 ACTCACCACTATACTACCGAGGA 57078
|||||||||||||||||||||||
Sbjct 7495 ACTCACCACTATACTACCGAGGA 7517
>seq85
Length=158702
Score = 98.7 bits (108), Expect = 1e-15
Identities = 74/86 (86%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 56994 TATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 57053
|| ||||||| |||| |||| | |||||||||| |||| ||||||||||||||||
Sbjct 1769 TAGGAAAAATC--CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGA 1826
Query 57054 ATACTCACCACTATACTACCGAGGAT 57079
||||||||||||||||||||||||||
Sbjct 1827 ATACTCACCACTATACTACCGAGGAT 1852
>seq2273
Length=3399
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| |||| | |||||||||| |||| |||||||||||||||| ||||||||||||
Sbjct 2891 TCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACT 2832
Query 57066 ATACTACCGAGGATTG 57081
||||||||||||| ||
Sbjct 2831 ATACTACCGAGGACTG 2816
Score = 95.1 bits (104), Expect = 1e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| |||| | |||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 3102 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 3161
Query 57067 TACTACCGAGGATTG 57081
|||||||||||| ||
Sbjct 3162 TACTACCGAGGACTG 3176
>seq1889
Length=4748
Score = 96.9 bits (106), Expect = 4e-15
Identities = 70/81 (86%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057
||||| | |||| |||| | |||||||||| |||| |||||||||||||||| ||||
Sbjct 2157 AAAAAGGTCCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATAC 2216
Query 57058 TCACCACTATACTACCGAGGA 57078
|||||||||||||||||||||
Sbjct 2217 TCACCACTATACTACCGAGGA 2237
>seq1452
Length=8395
Score = 96.9 bits (106), Expect = 4e-15
Identities = 70/81 (86%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057
||||| | |||| |||| | |||||||||| |||| |||||||||||||||| ||||
Sbjct 4651 AAAAAGGTCCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATAC 4592
Query 57058 TCACCACTATACTACCGAGGA 57078
|||||||||||||||||||||
Sbjct 4591 TCACCACTATACTACCGAGGA 4571
>seq211
Length=86670
Score = 96.9 bits (106), Expect = 4e-15
Identities = 70/81 (86%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057
||||| | |||| |||| | |||||||||| |||| |||||||||||||||| ||||
Sbjct 2063 AAAAAGGTCCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATAC 2004
Query 57058 TCACCACTATACTACCGAGGA 57078
|||||||||||||||||||||
Sbjct 2003 TCACCACTATACTACCGAGGA 1983
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543184580095040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |